•Eight marine Desulfovibrio strains. were analyzed for intact polar lipids (IPLs).•PE, PG, DPG and high amounts of phosphate-free ornithine lipids (OLs) were found.•OL content strongly increased with growth temperature, mostly at the expense of PE.•Homeoviscous adaptation mainly via IPL side chain modification.Eight sulfate-reducing Desulfovibrio strains isolated from intertidal sediments of the North Sea were investigated for their intact polar lipid (IPL) composition. They contained two types of IPLs, phospholipids and aminolipids. The dominating phospholipids were phosphatidylethanolamine (PE), phosphatidylglycerol (PG) and, in lower concentration, diphosphatidylglycerol (DPG). Aminolipids formed a significant IPL fraction in all strains and high resolution tandem mass spectrometry assigned them as phosphate-free ornithine lipids (OLs). In intertidal flat sediments microorganisms may face strong temperature change on varying timescales and it is crucial for the microbes to maintain constant membrane fluidity, e.g. by modification of their membrane lipid composition. We therefore investigated whether or not these strains employ the same strategies for adjusting their membrane composition to growth temperature and, in particular, how OLs are modified. In all strains the relative OL content was found to be higher at higher growth temperature, in most cases at the expense of PE content and less often PG content. The fatty acid (FA) side chains of the main PE and PG species were similar, i.e. both were dominated by C17 or C18, whereas C15 FAs were additionally found as major OL side chains. The temperature-related side chain variation was similar for all IPLs: unsaturated FA content was lower at higher temperature. The corresponding FA patterns after hydrolysis revealed elevated branched FA content and anteiso/iso ratio at higher growth temperature. As the temperature-related changes in the IPL side chains were similar for all strains, we conclude that side chain modification plays a major role in the maintenance of membrane fluidity at higher temperature and that alternative roles of OLs in the membrane adaptation of Desulfovibrio spp. other than melting point adjustment are possible.

Porewater advection stimulates nutrient exchange and microbial activity in shallow marine sediments, whereas element cycling in deeper diffusion-dominated sediments is comparatively slow due to limited nutrient supply. We studied the vertical distribution of microbial communities and organic matter (OM) cycling in these contrasting porewater regimes down to 5 m depth at an intertidal flat of the southern North Sea. Archaea, Bacteria and Eukarya were targeted, combining intact polar lipid (IPL) analysis with qualitative and quantitative molecular biological techniques. The largely sandy section 1 of the core (<75 cm) is characterized by rapid burial of fresh marine OM and intense porewater advection. This supply fuels heterotrophic microbes, as evident from the 13C isotopic composition of total organic carbon and IPL derivatives. Major sources of OM are algae and cyanobacteria, as suggested by the elevated amount of eukaryotic 18S rRNA gene copies and phosphate-free IPLs. The relative abundance of most phospholipids remained largely constant over the entire core, except for diphosphatidylglycerol, which represented about half of total IPL abundance in the lower part of section 1 (>50 cm) and the diffusion-dominated section 2 (75–490 cm). This suggests bacteria adapting their membranes in response to increasing physicochemical stress and starvation in the nutrient limited, fine grained sediments of section 2 with less bioavailable, predominantly terrestrial, OM. Relative amounts of bacterial acyl ether and diether phospholipids increased in this lower section and were assigned to sulfate reducers and yet uncultured myxobacteria. Archaea were an order of magnitude less abundant than Bacteria, and were affiliated mainly with Methanosarcinales and Methanomicrobiales. Accordingly, the archaeal IPL composition was typical for a methanogenic community. IPLs not exclusively derived from in situ microbial production emphasize that these biomarkers have to be interpreted with caution in sediments with complex hydrogeology. Our results demonstrate that contrasting subsurface flow regimes significantly impact on the vertical zonation of biogeochemical properties and microorganisms in marine sediments.Highlights► Combination of intact polar lipid analysis and molecular biological techniques. ► Burial and advection supply fresh marine organic matter to upper tidal sand flat. ► Algae and cyanobacteria serve as nutrients for heterotrophic microbes. ► Dominance of bacteria, with constant proportion of methanogenic archaea. ► Nutrient limitation due to diffusion causes bacteria to adapt their membranes.