Sapun H. Parekh

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Organization: Max Planck Institute for Polymer Research , Germany
Department: Department of Molecular Spectroscopy
Title: (PhD)

TOPICS

Co-reporter:Frederik Fleissner, Sabine Pütz, Mischa Schwendy, Mischa Bonn, and Sapun H. Parekh
Analytical Chemistry November 7, 2017 Volume 89(Issue 21) pp:11310-11310
Publication Date(Web):October 18, 2017
DOI:10.1021/acs.analchem.7b01895
Cell-penetrating peptides (CPPs) are short peptide sequences that can translocate across cellular plasma membranes and are thus potential delivery vectors for diagnostic and therapeutic applications. Many CPPs exhibit some sort of structural polymorphism, where the secondary structure of the peptide is altered strongly by its local environment, which is believed to facilitate membrane translocation and uptake. However, much less is known about the fate and structure of CPPs within cells largely due to measurement difficulty. Here we employ isotopic labeling combined with hyperspectral, quantitative coherent Raman microscopy to localize a model CPP—penetratin—and determine its secondary structure in different cellular compartments. Our results show that penetratin is mostly α-helical in the cytosol and acquires a more β-sheet and random coil character in the nucleus. The increased helicity in the cytosol is similar to that seen in previous studies with model lipid membranes, suggesting that the peptide is associated with membranes in, e.g., endosomes (or lysosomes) in the cytosol. The ability to both localize and determine the secondary structure of a CPP within cells is critical for clarifying the mechanism of peptide-mediated translocation and delivery of cargo molecules to specific cellular destinations.
Co-reporter:Allen P. Liu;Ovijit Chaudhuri
Integrative Biology (2009-Present) 2017 vol. 9(Issue 5) pp:383-405
Publication Date(Web):2017/05/22
DOI:10.1039/C6IB00251J
The extracellular matrix (ECM) provides structural and biochemical support to cells within tissues. An emerging body of evidence has established that the ECM plays a key role in cell mechanotransduction – the study of coupling between mechanical inputs and cellular phenotype – through either mediating transmission of forces to the cells, or presenting mechanical cues that guide cellular behaviors. Recent progress in cell mechanotransduction research has been facilitated by advances of experimental tools, particularly microtechnologies, engineered biomaterials, and imaging and analytical methods. Microtechnologies have enabled the design and fabrication of controlled physical microenvironments for the study and measurement of cell–ECM interactions. Advances in engineered biomaterials have allowed researchers to develop synthetic ECMs that mimic tissue microenvironments and investigate the impact of altered physicochemical properties on various cellular processes. Finally, advanced imaging and spectroscopy techniques have facilitated the visualization of the complex interaction between cells and ECM in vitro and in living tissues. This review will highlight the application of recent innovations in these areas to probing cell–ECM interactions. We believe cross-disciplinary approaches, combining aspects of the different technologies reviewed here, will inspire innovative ideas to further elucidate the secrets of ECM-mediated cell control.
Co-reporter:H. Samet Varol;Fanlong Meng;Babak Hosseinkhani;Christian Malm;Daniel Bonn;Mischa Bonn;Alessio Zaccone
PNAS 2017 114 (16 ) pp:E3170-E3177
Publication Date(Web):2017-04-18
DOI:10.1073/pnas.1617069114
Polymer nanocomposites—materials in which a polymer matrix is blended with nanoparticles (or fillers)—strengthen under sufficiently large strains. Such strain hardening is critical to their function, especially for materials that bear large cyclic loads such as car tires or bearing sealants. Although the reinforcement (i.e., the increase in the linear elasticity) by the addition of filler particles is phenomenologically understood, considerably less is known about strain hardening (the nonlinear elasticity). Here, we elucidate the molecular origin of strain hardening using uniaxial tensile loading, microspectroscopy of polymer chain alignment, and theory. The strain-hardening behavior and chain alignment are found to depend on the volume fraction, but not on the size of nanofillers. This contrasts with reinforcement, which depends on both volume fraction and size of nanofillers, potentially allowing linear and nonlinear elasticity of nanocomposites to be tuned independently.
Co-reporter:Frederik Fleissner;Mischa Bonn
Science Advances 2016 Volume 2(Issue 7) pp:e1501778
Publication Date(Web):08 Jul 2016
DOI:10.1126/sciadv.1501778

Mechanical loading of fibrin biomaterials induces spatial heterogeneity in protein molecular structure on the microscale.

Co-reporter:Xiao Ling;Dr. Mischa Bonn;Dr. Sapun H. Parekh;Dr. Katrin F. Domke
Angewandte Chemie International Edition 2016 Volume 55( Issue 12) pp:4011-4015
Publication Date(Web):
DOI:10.1002/anie.201600219

Abstract

The connection between the nanoscale structure of two chemically equivalent, yet morphologically distinct Nafion fuel-cell membranes and their macroscopic chemical properties is demonstrated. Quantification of the chemical interactions between water and Nafion reveals that extruded membranes have smaller water channels with a reduced sulfonic acid head group density compared to dispersion-cast membranes. As a result, a disproportionally large amount of non-bulk water molecules exists in extruded membranes, which also exhibit larger proton conductivity and larger water mobility compared to cast membranes. The differences in the physicochemical properties of the membranes, that is, the chemical constitution of the water channels and the local water structure, and the accompanying differences in macroscopic water and proton transport suggest that the chemistry of nanoscale channels is an important, yet largely overlooked parameter that influences the functionality of fuel-cell membranes.

Co-reporter:Xiao Ling;Dr. Mischa Bonn;Dr. Sapun H. Parekh;Dr. Katrin F. Domke
Angewandte Chemie 2016 Volume 128( Issue 12) pp:4079-4083
Publication Date(Web):
DOI:10.1002/ange.201600219

Abstract

The connection between the nanoscale structure of two chemically equivalent, yet morphologically distinct Nafion fuel-cell membranes and their macroscopic chemical properties is demonstrated. Quantification of the chemical interactions between water and Nafion reveals that extruded membranes have smaller water channels with a reduced sulfonic acid head group density compared to dispersion-cast membranes. As a result, a disproportionally large amount of non-bulk water molecules exists in extruded membranes, which also exhibit larger proton conductivity and larger water mobility compared to cast membranes. The differences in the physicochemical properties of the membranes, that is, the chemical constitution of the water channels and the local water structure, and the accompanying differences in macroscopic water and proton transport suggest that the chemistry of nanoscale channels is an important, yet largely overlooked parameter that influences the functionality of fuel-cell membranes.

Co-reporter:Denise K. Schach; William Rock; Johannes Franz; Mischa Bonn; Sapun H. Parekh;Tobias Weidner
Journal of the American Chemical Society 2015 Volume 137(Issue 38) pp:12199-12202
Publication Date(Web):September 3, 2015
DOI:10.1021/jacs.5b06720
Cell-penetrating peptides (CPPs) are promising molecules as drug carriers. However, because their uptake mainly involves endocytic mechanisms, endosomal trapping of the carrier (and drug) remains a high barrier for biomedical applications. The viral fusion mimic GALA, a pH-triggered CPP, takes advantage of the decreasing pH during endosome maturation to selectively attack endosomal membranes. Below pH 6, the sequence folds into a helix and can disrupt membranes. In this study, we show that the lipid bilayer radius-of-curvature has a negligible effect on GALA-induced leakage kinetics and that GALA remains pH responsive after inserting into a lipid membrane. The peptide can be reversibly “switched” between its inactive and active states after incorporation into the hydrophobic environment of lipid membranes, even after substantially interacting with lipid chains. This ability makes GALA-based delivery a potentially safe and efficient strategy for endosomal escape.
Co-reporter:Nils Billecke, Madeleen Bosma, William Rock, Frederik Fleissner, Gerrit Best, Patrick Schrauwen, Sander Kersten, Mischa Bonn, Matthijs K. C. Hesselink and Sapun H. Parekh  
Integrative Biology 2015 vol. 7(Issue 4) pp:467-476
Publication Date(Web):17 Mar 2015
DOI:10.1039/C4IB00271G
Accumulation of fat in muscle tissue as intramyocellular lipids (IMCLs) is closely related to the development of insulin resistance and subsequent type 2 diabetes. Most IMCLs organize into lipid droplets (LDs), the fates of which are regulated by lipid droplet coat proteins. Perilipin 5 (PLIN5) is an LD coating protein, which is strongly linked to lipid storage in muscle tissue. Here we employ a tandem in vitro/ex vivo approach and use chemical imaging by label-free, hyperspectral coherent Raman microscopy to quantify compositional changes in individual LDs upon PLIN5 overexpression. Our results directly show that PLIN5 overexpression in muscle alters individual LD composition and physiology, resulting in larger LDs with higher esterified acyl chain concentration, increased methylene content, and more saturated lipid species. These results suggest that lipotoxic protection afforded by natural PLIN5 upregulation in muscle involves molecular changes in lipid composition within LDs.
Co-reporter:H. Samet Varol, M. Alejandra Sánchez, Hao Lu, Joe E. Baio, Christian Malm, Noemi Encinas, Marius R. B. Mermet-Guyennet, Nicolas Martzel, Daniel Bonn, Mischa Bonn, Tobias Weidner, Ellen H. G. Backus, and Sapun H. Parekh
Macromolecules 2015 Volume 48(Issue 21) pp:7929-7937
Publication Date(Web):October 26, 2015
DOI:10.1021/acs.macromol.5b01111
Dispersing hydrophilic nanofillers in highly hydrophobic polymer matrices is widely used to tune the mechanical properties of composite material systems. The ability to control the dispersion of fillers is closely related to the mechanical tunability of such composites. In this work, we investigate the physical–chemical underpinnings of how simple end-group modification to one end of a styrene–butadiene chain modifies the dispersion of silica fillers in a polymer matrix. Using surface-sensitive spectroscopies, we directly show that polymer molecular orientation at the silica surface is strongly constrained for silanol functionalized polymers compared to nonfunctionalized polymers because of covalent interaction of silanol with silica. Silanol functionalization leads to reduced filler aggregation in composites. The results from this study demonstrate how minimal chemical modifications of polymer end groups are effective in modifying microstructural properties of composites by inducing molecular ordering of polymers at the surface of fillers.
Co-reporter:Robert Dorresteijn;Nils Billecke;Mischa Schwendy;Sabine Pütz;Mischa Bonn;Markus Klapper;Klaus Müllen
Advanced Functional Materials 2014 Volume 24( Issue 26) pp:4026-4033
Publication Date(Web):
DOI:10.1002/adfm.201304074

A versatile nanoparticle system is presented in which drug release is triggered by enzymatic polymer cleavage, resulting in a physicochemical change of the carrier. The polylactide-block-peptide-block-polylactide triblock copolymer is generated by initiation of the ring-opening polymerization of L-lactide with a complex bifunctional peptide having an enzymatic recognition and cleavage site (Pro-Leu-Gly-Leu-Ala-Gly). This triblock copolymer is specifically bisected by matrix metalloproteinase-2 (MMP-2), an enzyme overexpressed in tumor tissues. Triblock copolymer nanoparticles formed by nonaqueous emulsion polymerization are readily transferred into aqueous media without aggregation, even in the presence of blood serum. Cleavage of the triblock copolymer leads to a significant decrease of the glass transition temperature (Tg) from 39 °C to 31 °C, likely mediating cargo release under physiological conditions. Selective drug targeting is demonstrated by hampered mitosis and increased cell death resulting from drug release via MMP-2 specific cleavage of triblock copolymer carrier. On the contrary, nanocarriers having a scrambled (non-recognizable) peptide sequence do not cause enhanced cytotoxicity, demonstrating the enzyme-specific cleavage and subsequent drug release. The unique physicochemical properties, cleavage-dependent cargo release, and tunability of carrier bioactivity by simple peptide exchange highlight the potential of this polymer-nanoparticle concept as platform for custom-designed carrier systems.

Co-reporter:Nils Billecke;Gianluca Rago;Madeleen Bosma
Histochemistry and Cell Biology 2014 Volume 141( Issue 3) pp:263-273
Publication Date(Web):2014 March
DOI:10.1007/s00418-013-1161-2
The accumulation of lipids in non-adipose tissues is attracting increasing attention due to its correlation with obesity. In muscle tissue, ectopic deposition of specific lipids is further correlated with pathogenic development of insulin resistance and type 2 diabetes. Most intramyocellular lipids are organized into lipid droplets (LDs), which are metabolically active organelles. In order to better understand the putative role of LDs in pathogenesis, insight into both the location of LDs and nearby chemistry of muscle tissue is very useful. Here, we demonstrate the use of label-free coherent anti-Stokes Raman scattering (CARS) microscopy in combination with multivariate, chemometric analysis to visualize intracellular lipid accumulations in ex vivo muscle tissue. Consistent with our previous results, hyperspectral CARS microscopy showed an increase in LDs in tissues where LD proteins were overexpressed, and further chemometric analysis showed additional features morphologically (and chemically) similar to mitochondria that colocalized with LDs. CARS imaging is shown to be a very useful method for label-free stratification of ectopic fat deposition and cellular organelles in fresh tissue sections with virtually no sample preparation.
Co-reporter:Sabine Daemen, Marc A.M.J. van Zandvoort, Sapun H. Parekh, Matthijs K.C. Hesselink
Molecular Metabolism (March 2016) Volume 5(Issue 3) pp:153-163
Publication Date(Web):1 March 2016
DOI:10.1016/j.molmet.2015.12.005
BackgroundExcess storage of lipids in ectopic tissues, such as skeletal muscle, liver, and heart, seems to associate closely with metabolic abnormalities and cardiac disease. Intracellular lipid storage occurs in lipid droplets, which have gained attention as active organelles in cellular metabolism. Recent developments in high-resolution microscopy and microscopic spectroscopy have opened up new avenues to examine the physiology and biochemistry of intracellular lipids.Scope of reviewThe aim of this review is to give an overview of recent technical advances in microscopy, and its application for the visualization, identification, and quantification of intracellular lipids, with special focus to lipid droplets. In addition, we attempt to summarize the probes currently available for the visualization of lipids.Major conclusionsThe continuous development of lipid probes in combination with the rapid development of microscopic techniques can provide new insights in the role and dynamics of intracellular lipids. Moreover, in situ identification of intracellular lipids is now possible and promises to add a new dimensionality to analysis of lipid biochemistry, and its relation to (patho)physiology.
1H,3H-Perylo[3,4-cd]pyran-1,3-dione, 8-bromo-
GALA
3,5,8-Trioxa-4-phosphahexacos-17-en-1-aminium,4-hydroxy-N,N,N-trimethyl-9-oxo-7-[[(1-oxohexadecyl)oxy]methyl]-, inner salt,4-oxide, (7R,17Z)-