Co-reporter:Jessica P. Morgan;Holly M. Weaver-Guevara;Ryan W. Fitzgerald
Structural Chemistry 2017 Volume 28( Issue 2) pp:327-331
Publication Date(Web):2017 April
DOI:10.1007/s11224-016-0871-1
1-Methyl-4-silatranone could exhibit the structural aspects of a typical silatrane including a short N–Si bond distance reflecting a dative bond. But given the significant amide resonance in a [3.3.3] bridgehead bicyclic lactam, the lone pair could be shared with the carbonyl group leading to a very long N–Si bond, essentially a “non-silatrane.” Ab initio calculations (MP2/6-311 + G*) predict that ground state conformations of this molecule are best regarded as lactams rather than silatranes, the most stable having a calculated N–Si bond length of 2.902 Å and an N–CO bond length of 1.387 Å. The calculated transition state for inversion of the amide ring retains very little amide resonance (N–CO, 1.440 Å). Some of this loss is compensated through tightening of the N–Si bond (2.422 Å), leading to a net energy of activation of ca 8 kcal/mol. Attempts to synthesize 1-methyl-4-silatranone using conventional pathways successful for 1-methylsilatrane [condensations employing N,N-bis(2-hydroxyethyl)glycolamide in place of tris(2-hydroxyethyl)amine] were unsuccessful. This is due to the net loss in resonance energy of the amide reactant relative to that in the [3.3.3] system, the essential absence of the N–Si dative bond, and the rigidity introduced by the planar amide linkage in the starting material. A more likely pathway to successful synthesis should be formation of the amide linkage in the final step.
Co-reporter:Kathleen M. Morgan, David J. Ashline, Jessica P. Morgan, and Arthur Greenberg
The Journal of Organic Chemistry 2014 Volume 79(Issue 2) pp:517-528
Publication Date(Web):December 6, 2013
DOI:10.1021/jo402041u
Three lactams having, respectively, ∼20, ∼10, and 0 kcal/mol of resonance energy have been subjected to electrospray ionization mass spectrometry (ESI/MS) as well as to attempted reaction with dimethyldioxirane (DMDO). The ESI/MS for all three lactams are consistent with fragmentation from the N-protonated, rather than the O-protonated tautomer. Each exhibits a unique fragmentation pathway. DFT calculations are employed to provide insights concerning these pathways. N-Ethyl-2-pyrrolidinone and 1-azabicyclo[3.3.1]nonan-2-one, the full- and half-resonance lactams, are unreactive with DMDO. The “Kirby lactam” (3,5,7-trimethyl-1-azaadamantan-2-one) has zero resonance energy and reacts rapidly with DMDO to generate a mixture of reaction products. The structure assigned to one of these is the 2,2-dihydroxy-N-oxide, thought to be stabilized by intramolecular hydrogen bonding and buttressing by the methyl substituents. A reasonable pathway to this derivative might involve formation of an extremely labile N-oxide, in a purely formal sense, an example of the hitherto-unknown amide N-oxides, followed by hydration with traces of moisture.
Co-reporter:Jessica Morgan
Structural Chemistry 2013 Volume 24( Issue 6) pp:1945-1956
Publication Date(Web):2013 December
DOI:10.1007/s11224-013-0274-5
The very rapid benzene oxide/oxepin equilibrium plays an important role in the metabolism of benzene by cytochrome P450. Although it is the benzene oxide valence tautomer that is attacked by nucleophiles and rearranges to phenols in acidic media, it is the oxepin valence isomers that suffer one-electron oxidation. However, some other reactions are more competitive and also furnish useful illustrations of the Curtin–Hammett principle. For example, while oxepin and benzene oxide are comparable in energy, the only reaction product with maleic anhydride is the Diels–Alder adduct with benzene oxide. Density function theory (B3LYP/6-31G*) calculations are employed for study of three sets of benzene oxide/oxepin equilibria and Diels–Alder reactions with maleic anhydride and dimethylazodicarboxylate as well as epoxidation by dioxirane. Comparisons are made between theory and published experimental data.
Co-reporter:Jessica Morgan
Journal of Physical Organic Chemistry 2012 Volume 25( Issue 12) pp:1422-1428
Publication Date(Web):
DOI:10.1002/poc.3030
An earlier study fit calculated dynamic 13C-NMR spectra in trifluoroacetic acid (TFA) (with added sulfuric acid) to slow exchange between N-protonated and O-protonated tautomers of 1-azabicyclo[3.3.1]nonan-2-one. The present study reports simultaneous observation of both carbonyl 13C peaks in 40% sulfuric acid/60% TFA at −40 °C. This furnishes the only example in which experimental carbonyl 13C chemical shifts may be compared with a neutral lactam (in TFA or CDCl3) with its N-protonated and O-protonated derivatives. The seemingly anomalous upfield chemical shifts (experimental and computational) of the 13C carbonyl peaks in this N-protonated lactam (and other twisted N-protonated lactams) relative to the free bases are compared with data for unstrained protonated lactams and amides. The results are rationalized through conventional resonance structures. Copyright © 2012 John Wiley & Sons, Ltd.
Co-reporter:Brian Sliter, Jessica Morgan, and Arthur Greenberg
The Journal of Organic Chemistry 2011 Volume 76(Issue 8) pp:2770-2781
Publication Date(Web):March 10, 2011
DOI:10.1021/jo200195a
Protonation of typical unstrained amides and lactams is heavily favored at oxygen. In contrast, protonation of the highly distorted lactam 1-azabicyclo[2.2.2]octan-2-one is heavily favored at nitrogen. What structures occupy “crossover boundaries” where N- and O-protonation are nearly equienergetic? Density function theory calculations at the B3LYP/6-31G* level, as well as QCISD(T)/6-31G* calculations, predict that 1-azabicyclo[3.3.1]nonan-2-one favors N-protonation at nitrogen only very slightly (<2.0 kcal/mol; “gas phase”) over O-protonation. 1H and 13C NMR as well as ultraviolet (UV) studies of this lactam, in its combination with sulfuric acid, confirm predominant protonation at nitrogen. Although the calculations very slightly favor the N-protonated chair−chair conformation, experimental spectra clearly support the N-protonated boat-chair. Broadened resonances in the 13C NMR spectrum suggest an exchange phenomenon. Variable-temperature studies of the 13C NMR spectra support dynamic exchange between the major tautomer (N-protonated) and the minor tautomer (O-protonated) in a roughly 4:1 mixture. The findings also support the published prediction that a twisted bridgehead lactam with the nitrogen lone pair (nN) as HOMO will protonate at nitrogen.
Co-reporter:Dhananjaya Nauduri
Structural Chemistry 2009 Volume 20( Issue 3) pp:417-421
Publication Date(Web):2009 June
DOI:10.1007/s11224-009-9431-2
The energies of the highest-occupied molecular orbitals (HOMOs) are known to be excellent predictors of the reactivities of biogenic hydrocarbons, such as terpenes, with reactive atmospheric oxidants including O3, OH, and NO3. Structure–Activity Relationships (SARs) have also been effectively employed in such studies and related to HOMO energies and lowest ionization energies (ionization potentials). This study employs density function theory (DFT), at the B3LYP/6-31G** level, to predict vertical ionization energies (IPv) for a structurally diverse group of sesquiterpenes, each of which has been reported in air samples collected in the lower troposphere. The availability of published UV photoelectron spectra for nine sesquiterpenes permits comparison of experimental and theoretical vertical ionization energy data. The experimental and theoretical data show a good correlation (average discrepancy ± 0.07 eV). This enables predictions of reactivities for sesquiterpenes whose tropospheric lifetimes may last only a few hours before their transformations into secondary organic aerosols (SOA) close to their emission sources.