Garnet Kin-Lic Chan

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Name: CHAN, GARNET
Organization: Princeton University , USA
Department: Department of Chemistry
Title: (PhD)
Co-reporter:Thomas J. Watson Jr. and Garnet Kin-Lic Chan
Journal of Chemical Theory and Computation 2016 Volume 12(Issue 2) pp:512-522
Publication Date(Web):May 28, 2015
DOI:10.1021/acs.jctc.5b00138
We describe how to create ab initio effective Hamiltonians that qualitatively describe correct chemistry even when used with a minimal basis. The Hamiltonians are obtained by folding correlation down from a large parent basis into a small, or minimal, target basis, using the machinery of canonical transformations. We demonstrate the quality of these effective Hamiltonians to correctly capture a wide range of excited states in water, nitrogen, and ethylene and to describe ground and excited state bond breaking in nitrogen and the chromium dimer, all in small or minimal basis sets.
Co-reporter:Sheng Guo, Mark A. Watson, Weifeng Hu, Qiming Sun, and Garnet Kin-Lic Chan
Journal of Chemical Theory and Computation 2016 Volume 12(Issue 4) pp:1583-1591
Publication Date(Web):February 25, 2016
DOI:10.1021/acs.jctc.5b01225
The strongly contracted variant of second-order N-electron valence state perturbation theory (NEVPT2) is an efficient perturbative method to treat dynamic correlation without the problems of intruder states or level shifts, while the density matrix renormalization group (DMRG) provides the capability to address static correlation in large active spaces. We present a combination of the DMRG and strongly contracted NEVPT2 (DMRG-SC-NEVPT2) that uses an efficient algorithm to compute high-order reduced-density matrices from DMRG wave functions. The capabilities of DMRG-SC-NEVPT2 are demonstrated on calculations of the chromium dimer potential energy curve at the basis set limit, and the excitation energies of a trimer model of poly(p-phenylenevinylene) (PPV(n = 3)).
Co-reporter:Weifeng Hu and Garnet Kin-Lic Chan
Journal of Chemical Theory and Computation 2015 Volume 11(Issue 7) pp:3000-3009
Publication Date(Web):May 14, 2015
DOI:10.1021/acs.jctc.5b00174
We describe and extend the formalism of state-specific analytic density matrix renormalization group (DMRG) energy gradients, first used by Liu et al. [J. Chem. Theor. Comput. 2013, 9, 4462]. We introduce a DMRG wave function maximum overlap following technique to facilitate state-specific DMRG excited-state optimization. Using DMRG configuration interaction (DMRG-CI) gradients, we relax the low-lying singlet states of a series of trans-polyenes up to C20H22. Using the relaxed excited-state geometries, as well as correlation functions, we elucidate the exciton, soliton, and bimagnon (“single-fission”) character of the excited states, and find evidence for a planar conical intersection.
Co-reporter:Qiming Sun and Garnet Kin-Lic Chan
Journal of Chemical Theory and Computation 2014 Volume 10(Issue 9) pp:3784-3790
Publication Date(Web):July 25, 2014
DOI:10.1021/ct500512f
Motivated by recent work in density matrix embedding theory, we define exact link orbitals that capture all quantum mechanical (QM) effects across arbitrary quantum mechanics/molecular mechanics (QM/MM) boundaries. Exact link orbitals are rigorously defined from the full QM solution, and their number is equal to the number of orbitals in the primary QM region. Truncating the exact set yields a smaller set of link orbitals optimal with respect to reproducing the primary region density matrix. We use the optimal link orbitals to obtain insight into the limits of QM/MM boundary treatments. We further analyze the popular general hybrid orbital (GHO) QM/MM boundary across a test suite of molecules. We find that GHOs are often good proxies for the most important optimal link orbital, although there is little detailed correlation between the detailed GHO composition and optimal link orbital valence weights. The optimal theory shows that anions and cations cannot be described by a single link orbital. However, expanding to include the second most important optimal link orbital in the boundary recovers an accurate description. The second optimal link orbital takes the chemically intuitive form of a donor or acceptor orbital for charge redistribution, suggesting that optimal link orbitals can be used as interpretative tools for electron transfer. We further find that two optimal link orbitals are also sufficient for boundaries that cut across double bonds. Finally, we suggest how to construct “approximately” optimal link orbitals for practical QM/MM calculations.
Co-reporter:Jun Yang;Weifeng Hu;Denis Usvyat;Devin Matthews;Martin Schütz
Science 2014 Volume 345(Issue 6197) pp:
Publication Date(Web):
DOI:10.1126/science.1254419

Working out how to pack benzene in silico

Many organic compounds crystallize in several different energetically similar packing arrangements, or polymorphs. This complicates processes such as drug formulation that rely on reproducible crystallization. Yang et al. have now achieved the long-standing goal of calculating a crystal packing arrangement from first principles to an accuracy that can distinguish polymorphs (see the Perspective by Price). They used benzene as a prototypical test case and applied quantum chemical methods that improve estimates of multibody interactions. The results bode well for future applications of theory to optimization of crystallization protocols.

Science, this issue p. 640; see also p. 619

1,3,5,7,9-Decapentaene, (E,E,E)-