Janusz Jurczak

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Organization: Polish Academy of Sciences
Department: Department of Chemistry
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Co-reporter:Kajetan Dąbrowa, Patryk Niedbała, and Janusz Jurczak
The Journal of Organic Chemistry 2016 Volume 81(Issue 9) pp:3576-3584
Publication Date(Web):April 8, 2016
DOI:10.1021/acs.joc.6b00200
The symmetrical molecular receptors 1a and 1b consisting of a photochemically addressable azobenzene tether functionalized with urea hydrogen-bonding groups and d-carbohydrates as chiral selectors were developed to achieve control over the chiral recognition of α-amino acid-derived carboxylates. The photo- and thermally interconvertible planar E-1 and concaved Z-1 were found to exhibit different affinities, selectivities, and binding modes toward these biologically important anions in a highly polar medium (DMSO + 0.5% H2O). Binding affinity for the same enantiomerically pure guest was up to 3 times higher for E-1 than for Z-1 (cf. parameter β). In addition, the rate of thermal Z → E isomerization was found to depend on the chiral binding ability of Z-1, i.e., more strongly bound carboxylate enantiomer as well as higher enantiomer concentration caused faster relaxation to E-1.
Co-reporter:Filip Ulatowski, Kajetan Dąbrowa, Tomasz Bałakier, and Janusz Jurczak
The Journal of Organic Chemistry 2016 Volume 81(Issue 5) pp:1746-1756
Publication Date(Web):February 11, 2016
DOI:10.1021/acs.joc.5b02909
Continuous variation method, known as Job plot, is the most commonly applied method for the determination of stoichiometry of complex chemical entities for over 100 years. Although, the method was proven successful in the analysis of very stable metal–ligand complexes, we demonstrate that its use in supramolecular chemistry often provides false results. We support this statement with multiple simulations as well as cases studies of several real host–guest systems. We propose an alternative, general method relying on the analysis of residual distribution in titration data fitting. The latter method is more convenient compared to the Job plot and unlike it gives correct results in all real cases studied.
Co-reporter:Krzysztof Ziach and Janusz Jurczak  
Chemical Communications 2015 vol. 51(Issue 20) pp:4306-4309
Publication Date(Web):03 Feb 2015
DOI:10.1039/C4CC10083B
Spontaneous emergence of solid state chirality and mirror symmetry breaking occurred upon crystallization from a small templated dynamic combinatorial library (DCL) of achiral macrocyclic imines, and depended strongly on the nature of library building blocks (amines, aldehydes, template cations and anions) and crystallization temperature.
Co-reporter:Kajetan Dabrowa, Patryk Niedbala, Maciej Majdecki, Piotr Duszewski, and Janusz Jurczak
Organic Letters 2015 Volume 17(Issue 19) pp:4774-4777
Publication Date(Web):September 11, 2015
DOI:10.1021/acs.orglett.5b02324
A practical four-step synthesis of a model 26-membered N-Boc-protected macrocycle, starting from commercially available and inexpensive materials, is reported. The crucial macrocyclization step does not require high-dilution conditions and is completed in a short time (8 h). The high yield of macrocyclization (61%) is achieved owing to templation by intramolecular H-bonds and a chloride anion, which both help to adopt a favorable folded conformation of the open-chain intermediate. Finally, mild, selective, and efficient incorporation of intraannular amide function leading to five diversely functionalized unclosed cryptands (UCs) is described.
Co-reporter:Jarosław M. Granda, Jakub Grabowski, and Janusz Jurczak
Organic Letters 2015 Volume 17(Issue 23) pp:5882-5885
Publication Date(Web):November 20, 2015
DOI:10.1021/acs.orglett.5b03066
A new anion binding motif based on triptycene core has been synthesized from 2,7,14-trinitrotriptycene. Its well-defined binding pocket allowed for the selective recognition and sensing of dihydrogen phosphate in DMSO-d6 + 0.5% H2O.
Co-reporter:Krzysztof Ziach and Janusz Jurczak
Crystal Growth & Design 2015 Volume 15(Issue 9) pp:4372-4376
Publication Date(Web):July 27, 2015
DOI:10.1021/acs.cgd.5b00658
Dynamic combinatorial chemistry (DCC) was initially introduced as a means to solve problems of effective synthesis of complex compounds in solution. It benefits from the use of reversible reactions to connect simple building blocks under thermodynamic control. We present an application of DCC to generate structurally diverse crystalline complexes of macrocyclic imines, some of which crystallized as chiral crystals, despite the use of achiral substrates only. Features of imine complexes such as easy synthesis of building blocks and a high tendency to crystallize make them good candidates for studying the relationship between molecular structure and crystallinity.
Co-reporter:Filip Ulatowski, Dawid Lichosyt and Janusz Jurczak  
Organic & Biomolecular Chemistry 2015 vol. 13(Issue 42) pp:10451-10455
Publication Date(Web):22 Sep 2015
DOI:10.1039/C5OB01698C
We show herein that establishing a competition between a static receptor and components of dynamic combinatorial libraries to bind an appropriately selected template can be used to determine association constants by HPLC analysis after freezing of the equilibrium.
Co-reporter:Filip Ulatowski, Paulina Hamankiewicz, and Janusz Jurczak
ACS Combinatorial Science 2015 Volume 17(Issue 9) pp:488
Publication Date(Web):August 11, 2015
DOI:10.1021/acscombsci.5b00075
A novel method of evaluating the enantioselectivity of chiral receptors is investigated. It involves extraction of an ionic guest in racemic form from an ion-exchange resin to the organic solvent, where it is bound by a chiral receptor. The enantioselectivity of the examined receptor is determined simply by measuring the enantiomeric excess of the extracted guest. We show that the concept is viable for neutral receptors binding chiral organic anions extracted into acetonitile. This method was determined to be more accurate and far less time-consuming than the classical titrations. Multiple racemic guests can be applied to a resin in a single experiment, giving the method a very high throughput.Keywords: anion binding; chiral recognition; enantioselective extraction; high throughput; host−guest interactions
Co-reporter:Dr. Jaros&x142;aw M. Gra ; Janusz Jurczak
Chemistry - A European Journal 2015 Volume 21( Issue 46) pp:16585-16592
Publication Date(Web):
DOI:10.1002/chem.201502932

Abstract

In this study, we have conducted a systematic investigation of the chiral recognition of carboxylic anions by D-glucuronic acid/diindolylmethane receptors. We investigate the influence of the anion structure on chiral recognition in the diindolylmethane/glucuronic acid-based receptor 1 a. We found that presence of an additional hydrogen-bond donor at the α position to the carboxylic function is essential for effective chiral differentiation in these systems. Furthermore, we present a synthetic procedure that allows for the synthesis of sugar-decorated receptors that possess a modified substituent at the anomeric position. Four new receptors 1 be have been synthesized, and their chiral-discrimination ability toward model carboxylates is studied. The obtained results show that the chiral recognition of these receptors can be fine-tuned by incorporation of a proper substituent into the receptor structure.

Co-reporter:Filip Ulatowski and Janusz Jurczak
The Journal of Organic Chemistry 2015 Volume 80(Issue 9) pp:4235-4243
Publication Date(Web):April 13, 2015
DOI:10.1021/acs.joc.5b00403
Chiral recognition is based on a large network of very subtle interactions whose outcome is difficult to predict. A combinatorial approach is therefore the most suitable to search for the most efficient receptor and obtain a structure–enantioselectivity correlation. We synthesized a set of 12 receptors constructed with 1,9-diaminoantracene and α-amino acid esters, linked via thiourea groups. The association constants and enantioselectivities for the complexes with mandelate and N-acetylphenylalanine were determined by competitive NMR titrations. Association constants quite regularly depend on the substituents in the receptor structure, but the distribution of enantioselectivities across the library could not easily be rationalized.
Co-reporter:Kajetan Dąbrowa, Patryk Niedbała and Janusz Jurczak  
Chemical Communications 2014 vol. 50(Issue 99) pp:15748-15751
Publication Date(Web):27 Oct 2014
DOI:10.1039/C4CC07798A
Herein, we report that thermal Z→E isomerisation of simple azobenzene urea derivatives is selectively and predictably controlled by anion binding. The rate of this process depends strictly on the anion concentration and its binding affinity to the Z-isomer of the azobenzene host, i.e. increased rate constants are observed for higher anion concentration as well as for more strongly bound guests. The origin of this phenomenon is attributed to the electron density transfer from the anion to the host π-system, resulting in increased repulsion between the lone electron pairs in the NN bond.
Co-reporter:Kajetan Dąbrowa, Magdalena Ceborska, and Janusz Jurczak
Crystal Growth & Design 2014 Volume 14(Issue 10) pp:4906-4910
Publication Date(Web):September 17, 2014
DOI:10.1021/cg501314m
Unclosed cryptands (UCs) are neutral and easily accessible compounds with precisely defined spatial arrangement of various functional groups. They readily form crystals with a unusually high packing efficiency (≥0.8), thus providing a well-suited 3D-framework for study of supramolecular assemblies. Herein, one example of the discrete eight-membered water cluster trapped in the matrix of UC 1 is presented. X-ray, ATR FT-IR, and DFT studies indicate extraordinary stability of this assembly, which originated from the cumulative interplay of many noncovalent interactions—hydrogen bonds and London dispersion forces.
Co-reporter:K. Ziach, A. Kulesza and J. Jurczak  
Organic & Biomolecular Chemistry 2014 vol. 12(Issue 23) pp:3827-3830
Publication Date(Web):08 May 2014
DOI:10.1039/C4OB00507D
An example of the subtle interplay between the intended templation and a very fast reequilibration of a dynamic combinatorial library of imines that occurs upon a solvent change is reported. Such seemingly “irrelevant” details of the procedure like imine dissolution time prior to reduction may dictate the outcome of the whole reaction.
Co-reporter:Filip Ulatowski, Janusz Jurczak
Tetrahedron: Asymmetry 2014 Volume 25(13–14) pp:962-968
Publication Date(Web):31 July 2014
DOI:10.1016/j.tetasy.2014.06.004
A library of eight neutral anion receptors consisting of α-amino acid esters attached to o-phenylenediamine by urea groups was synthesized and analysed in terms of capacity for chiral recognition of carboxylates. The NMR titrations revealed that the association constants of complexes consisting of a chiral guest and a chiral host are two orders of magnitude lower than those of achiral partners. Diverse substituents in the receptor structure modify both the affinities and enantioselectivities.(2R,2′R)-Dimethyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-methylbutanoate)C20H30N4O6ee = 99%[α]D20 = −2.8 (c 0.5, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)(2R,2′R)-Diisopropyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-methylbutanoate)C24H38N4O6ee = 99%[α]D20 = −9.1 (c 0.5, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)(2R,2′R)-Dibutyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-methylbutanoate)C26H42N4O6ee = 99%[α]D20 = +1.6 (c 0.5, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)(2R,2′R)-Dibenzyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-methylbutanoate)C32H38N4O6ee = 99%[α]D20 = +2.0 (c 0.45, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)(2R,2′R)-Dimethyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-phenylpropanoate)C28H30N4O6ee = 99%[α]D20 = +7.2 (c 0.45, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)(2R,2′R)-Diisopropyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-phenylpropanoate)C32H38N4O6ee = 99%[α]D20 = +16.3 (c 0.5, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)(2R,2′R)-Dibutyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-phenylpropanoate)C34H42N4O6ee = 99%[α]D20 = +4.0 (c 0.5, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)(2R,2′R)-Dibenzyl 2,2′-(((1,2-phenylenebis(azanediyl))bis(carbonyl))bis(azanediyl))bis(3-phenylpropanoate)C40H38N4O6ee = 99%[α]D20 = −2.0 (c 0.5, MeCN)Source of chirality: starting materialsAbsolute configuration: (2R,2′R)
Co-reporter:Filip Ulatowski, Agnieszka Sadowska-Kuziol̷a, and Janusz Jurczak
The Journal of Organic Chemistry 2014 Volume 79(Issue 20) pp:9762-9770
Publication Date(Web):September 17, 2014
DOI:10.1021/jo501956h
A neutral anion binding receptor based on dipicolinic acid diamide was equipped with thiol groups in the amidic side arms. After the thiol was oxidized to disulfide groups with I2, a mixture of cyclic oligomers (a library) was obtained. The distribution of macrocycles can be controlled kinetically during the oxidation process or thermodynamically at basic conditions via disulfide bond exchange. The library proved to be very sensitive to templation with various carboxylates in DMSO. The amplification pattern reflects the structural features of the anionic template and is sensitive to changes in the template’s geometry. The application of carboxylates with multiple functional groups resulted in very strong amplification of the large penta- and hexameric macrocycles. The thermodynamic parameters of some templation effects were rationalized using a simple model and confirmed using competitive NMR titration.
Co-reporter:Jaros&x142;aw M. Gra;Dr. Olga Staszewska-Krajewska ; Janusz Jurczak
Chemistry - A European Journal 2014 Volume 20( Issue 40) pp:12790-12795
Publication Date(Web):
DOI:10.1002/chem.201403116

Abstract

We have designed anion receptor 4 based on a conformationally labile bispyrrolylbenzene framework, the conformation of which can be changed by appropriate anionic stimuli. In the absence of fluoride anion, the pyrrole moieties rotate freely at room temperature. However, when the concentration of fluoride anion exceeds 2 equivalents, the rotation of the pyrrole units slows down and the conformation of the receptor changes to anti-anti. DFT calculations have shown that this change is due to binding of a third fluoride anion through CH interaction. Anion receptor 4 can also serve as a molecular logic gate. Anionic inputs such as fluoride and dihydrogenphosphate allow the realization of INHIBIT and NAND logic gate functions with absorption and fluorescence as readouts, respectively.

Co-reporter:Jaros&x142;aw M. Gra;Dr. Olga Staszewska-Krajewska ; Janusz Jurczak
Chemistry - A European Journal 2014 Volume 20( Issue 40) pp:
Publication Date(Web):
DOI:10.1002/chem.201484072
Co-reporter:Jaros&x142;aw M. Gra ; Janusz Jurczak
Chemistry - A European Journal 2014 Volume 20( Issue 39) pp:12368-12372
Publication Date(Web):
DOI:10.1002/chem.201404081

Abstract

A novel strategy for classification of guest chirality based on the combination of artificial neural networks and anion-receptor chemistry is reported. The receptor reported herein forms supramolecular complexes with a variety of biologically important carboxylates, in which the chemical shift changes during addition of anions result in complex guest-stereochemistry-dependent patterns as followed by 1H NMR spectroscopy. The neural network had learnt these patterns from a training set of 12 anions, and successfully identified the “unknown” chirality of 14 guests present in the test set. Additionally, principal component analysis could discriminate most of the guests studied (26) and allowed for identification of the receptor protons, which are responsible for information transfer of guest chirality.

Co-reporter:Jaros&x142;aw M. Gra ; Janusz Jurczak
Chemistry - A European Journal 2014 Volume 20( Issue 39) pp:
Publication Date(Web):
DOI:10.1002/chem.201483971
Co-reporter:Jarosław M. Granda and Janusz Jurczak
Organic Letters 2013 Volume 15(Issue 18) pp:4730-4733
Publication Date(Web):August 29, 2013
DOI:10.1021/ol402074u
Anion receptors containing glucuronic acid were synthesized, and their anion binding ability studied. Chirality of anionic guests derived from mandelic acid and amino acids can be distinguished not only in terms of stability constants but also by significant differences in chemical shift changes for sugar moiety protons.
Co-reporter:Paulina Hamankiewicz, Jarosław M. Granda, Janusz Jurczak
Tetrahedron Letters 2013 Volume 54(Issue 41) pp:5608-5611
Publication Date(Web):9 October 2013
DOI:10.1016/j.tetlet.2013.08.019
Three new chiral urea-type anion receptors were synthesized from aromatic diamines and 1-amino-1-deoxyglucose. The anion binding properties of these receptors were studied using chiral carboxylates derived from mandelic acid and three α-amino acids. We found that the size of the anion binding pocket played an important role in chiral recognition processes. The best results were obtained for 1,8-diaminoanthracene and α-amino acid anions.
Co-reporter:Piotr Paluch, Sławomir Kaźmierski, Agata Jeziorna, Justyna Sniechowska, Kajetan Dabrowa, Jaroslaw J. Panek, Aneta Jezierska-Mazzarello, Janusz Jurczak, and Marek J. Potrzebowski
The Journal of Physical Chemistry B 2013 Volume 117(Issue 46) pp:14420-14431
Publication Date(Web):October 29, 2013
DOI:10.1021/jp406308a
1D and 2D NMR study, Car–Parrinello molecular dynamics, as well as classical molecular dynamics were employed to investigate three derivatives of benzodiazacoronands (achiral compounds which are able to form single crystals with a planar chirality) with intention to explain all subtle effects important during their preorganization, the step anticipating formation of crystals. The experimental study was carried out in two solvents: chloroform and DMSO either containing traces of water (commercial samples) or carefully dried over molecular sieves. Both methods revealed that environmental humidity has a dramatic influence on topology of solute–solvent interactions. Damping of the macrocycle dynamics by its diverse types of interactions with water molecules was shown by computational means. In the most spectacular experiment, we have proved that in chloroform-d during the low temperature measurements traces of water dramatically change the spectral pattern, leading to isochronous NMR signals of the AB spin system of benzodiazacoronand. The temperature of isochronous point (TIP) strongly depends on the benzodiazacoronand/water (BW) ratio. This observation opens a pathway to a new strategy based on variable temperature crystallizations and fitting of BW ratio with hope to optimize conditions for formation of chiral crystals.
Co-reporter:Tomasz Bałakier, Wojciech Chaładaj, Janusz Jurczak, Grażyna Adamus, Marek Kowalczuk
Tetrahedron 2013 69(24) pp: 4990-4993
Publication Date(Web):
DOI:10.1016/j.tet.2013.04.020
Co-reporter:K. Ziach, A. Kulesza and J. Jurczak
Organic & Biomolecular Chemistry 2014 - vol. 12(Issue 23) pp:NaN3830-3830
Publication Date(Web):2014/05/08
DOI:10.1039/C4OB00507D
An example of the subtle interplay between the intended templation and a very fast reequilibration of a dynamic combinatorial library of imines that occurs upon a solvent change is reported. Such seemingly “irrelevant” details of the procedure like imine dissolution time prior to reduction may dictate the outcome of the whole reaction.
Co-reporter:Kajetan Dąbrowa, Patryk Niedbała and Janusz Jurczak
Chemical Communications 2014 - vol. 50(Issue 99) pp:NaN15751-15751
Publication Date(Web):2014/10/27
DOI:10.1039/C4CC07798A
Herein, we report that thermal Z→E isomerisation of simple azobenzene urea derivatives is selectively and predictably controlled by anion binding. The rate of this process depends strictly on the anion concentration and its binding affinity to the Z-isomer of the azobenzene host, i.e. increased rate constants are observed for higher anion concentration as well as for more strongly bound guests. The origin of this phenomenon is attributed to the electron density transfer from the anion to the host π-system, resulting in increased repulsion between the lone electron pairs in the NN bond.
Co-reporter:Filip Ulatowski, Dawid Lichosyt and Janusz Jurczak
Organic & Biomolecular Chemistry 2015 - vol. 13(Issue 42) pp:NaN10455-10455
Publication Date(Web):2015/09/22
DOI:10.1039/C5OB01698C
We show herein that establishing a competition between a static receptor and components of dynamic combinatorial libraries to bind an appropriately selected template can be used to determine association constants by HPLC analysis after freezing of the equilibrium.
Co-reporter:Krzysztof Ziach and Janusz Jurczak
Chemical Communications 2015 - vol. 51(Issue 20) pp:NaN4309-4309
Publication Date(Web):2015/02/03
DOI:10.1039/C4CC10083B
Spontaneous emergence of solid state chirality and mirror symmetry breaking occurred upon crystallization from a small templated dynamic combinatorial library (DCL) of achiral macrocyclic imines, and depended strongly on the nature of library building blocks (amines, aldehydes, template cations and anions) and crystallization temperature.
9,10[1',2']-Benzenoanthracene-2,7,14-triamine, 9,10-dihydro-