Co-reporter:Wei Li, Xue Qi, Chao-Yue Zhao, Xiu-Fang Xu, An-Na TangDe-Ming Kong
ACS Applied Materials & Interfaces 2017 Volume 9(Issue 1) pp:
Publication Date(Web):December 9, 2016
DOI:10.1021/acsami.6b13998
Most of the reported metal organic frameworks (MOFs)-based DNA sensors were developed by utilizing the different adsorption capacities of MOFs to different structural DNAs (for example, single-stranded DNAs (ssDNAs) and double-stranded DNAs (dsDNAs)) or ssDNAs with different lengths. Herein, we introduced another strategy for the design of MOFs-based biosensing platforms. We found that specific small-sized amino acids (for example, glycine and serine) could lead to the destruction of the MOFs formed by [Cu(mal)(bpy)]·2H2O], thus recovering the fluorescence of a fluorophore-labeled ssDNA that had been quenched by MOFs. The corresponding working mechanism was discussed. On the basis of this finding, a mix-and-detect fluorescence method was designed for the turn-on detection of specific small-sized amino acids. The feasibility of its use in real serum samples was also demonstrated. Besides biosensing applications, the discovery of amino acids-triggered destruction of MOFs can also enrich the building blocks of molecular logic gate. As an example, a biomolecular logic gate that performs OR logic operation was constructed using glycine and a DNA strand as inputs.Keywords: amino acids; fluorescence biosensors; mechanism; metal organic frameworks; molecular logic gate;
Co-reporter:Jing XU, De-Ming KONG
Chinese Journal of Analytical Chemistry 2012 Volume 40(Issue 3) pp:347-353
Publication Date(Web):March 2012
DOI:10.1016/S1872-2040(11)60536-7
G-quadruplex DNAzymes are peroxidase-like complexes formed by hemin and some nucleic acid G-quadruplexes. Based on this kind of DNAzymes, several chemical sensors and biosensors have been developed. In this work, to improve the selectivity of G-quadruplex DNAzyme-based Hg2+ sensors, split G-quadruplex DNAzyme was introduced in the design of Hg2+ sensor. In this new Hg2+ sensor, G-quadruplex-forming G-rich sequence was divided into two parts, and the two parts were linked to the two ends of a Hg2+ -sensing sequence. In the absence of Hg2+, G-quadruplex structure could not be formed because G-rich sequence was partly caged into an intermolecular duplex. In the presence of Hg2+, however, the stabilization of the T-T mismatch by Hg2+ can promote the folding of the Hg2+ -sensing sequence into an intramolecular duplex, accompanied by the destruction of the intermolecular duplex and the formation of an intramolecular split G-quadruplex, which can form catalytically active G-quadruplex DNAzyme upon hemin binding. Using the increase of peroxidase activity of the sensing system, a Hg2+ detection method can be developed. Using this method, Hg2+ quantitation can be achieved in the concentration ranges of 50–500 nM and 2.0–7.5 ìM, with a detection limit of 47 nM. The use of split G-quadruplex DNAzyme can increase the specificity of the sensor for Hg2+, and thus, increase the selectivity of the sensor. The method was applied to the determination of Hg2+ in different water samples, and the average recovery was 97.46%–104.5%, indicating that this method can be used for trace analysis of Hg2+ in real samples.