Co-reporter:Shogo Sakai
Journal of Physical Organic Chemistry 2014 Volume 27( Issue 7) pp:555-564
Publication Date(Web):
DOI:10.1002/poc.3301
Stationary point structures (or stable structures) and the electronic states of polycyclic conjugated hydrocarbons are estimated by an extended combination method between two Kekulé structures (ECMK). The estimation by the ECMK required two postulation conditions. (i) Stationary point structures can be represented with one Kekulé structure or the combination of two Kekulé structures. (ii) Structures including element Kekulé structures of the structures with lower energy are not candidates for structures with higher energy. The structures and electronic states of 13 compounds composed of six-cyclic and four-cyclic rings were estimated by the ECMK, and corresponded to their geometries and the local aromaticity obtained by complete active space self-consistent field molecular orbital and B3LYP methods. Copyright © 2014 John Wiley & Sons, Ltd.
Co-reporter:Shogo Sakai, Yuki Kita
Chemical Physics Letters 2013 Volume 578() pp:49-53
Publication Date(Web):18 July 2013
DOI:10.1016/j.cplett.2013.06.013
•Structures and local aromaticity of conjugated polycyclic hydrocarbons were studied.•The three-type aromaticity models were treated.•Three aromatic indices (NICS, HOMA, and IDA) were tested.•The IDA values correspond best to the characteristics of the structures.The structures and local aromaticity of some conjugated polycyclic hydrocarbons (from the butadienoid, acene, and phenylene series) are studied using ab initio MO and density functional methods. The aromaticities of the molecules are estimated using three indices: the nucleus-independent chemical shift (NICS), the harmonic oscillator model of aromaticity (HOMA), and the index of deviation from aromaticity (IDA). Assessment of the relationships between the structures and the aromatic indices shows that the IDA values correspond best to the characteristics of the conjugated polycyclic hydrocarbon structures.Graphical abstract
Co-reporter:Shogo Sakai;Taro Udagawa;Shohei Kato ;Keita Nakada
Journal of Physical Organic Chemistry 2013 Volume 26( Issue 6) pp:517-522
Publication Date(Web):
DOI:10.1002/poc.3119
The mechanisms of the [2 + 2 + 2] cycloaddition reaction of three ethyne molecules were studied by ab initio molecular orbital and density functional methods. The transition states range from that of the concerted mechanism with D3h symmetry to that of the stepwise mechanism with C2 symmetry. The transition state structure and the activation energy depend on the basis set and computational method employed in the analysis. The activation energy barrier was determined to be in the range of 36–44 kcal/mol. The activation energy determined by various methods corresponds to the interaction energy, which is related to the electron correlation energy. The best estimation of the activation energy barrier is 41.6 kcal/mol, achieved from the relation between the interaction energy and the activation energy. Copyright © 2013 John Wiley & Sons, Ltd.
Co-reporter:Shogo Sakai;Yuuki Kita
Journal of Physical Organic Chemistry 2012 Volume 25( Issue 10) pp:840-849
Publication Date(Web):
DOI:10.1002/poc.2929
The combination method between asymmetric Kekulé structures (CMAK) was expanded to the structure prediction of a series of acenes and phenylenes. The structures predicted by the CMAK correspond to those calculated by the ab initio molecular orbital (MO) and B3LYP density functional methods. The CMAK can characterize the structures. The aromaticity for the whole ring and each ring in the treated compounds was estimated by the index of deviation from aromaticity (IDA). The estimated aromaticity corresponds fairly well to the characterization of the structure predicted by the CMAK. The predicted structures of linear acenes reveal the aromaticity of the central ring and also explain its reactivity. The side ring in [n]phenacene shows high aromaticity. The critical difference in the structure and aromaticity for the central six-membered ring of the isomers benzo[1,2:4,5]dicyclobutene and benzo[1,2:5,6]dicyclobutene was explained. Copyright © 2012 John Wiley & Sons, Ltd.
Co-reporter:Yuka Ichikawa
Journal of Physical Organic Chemistry 2012 Volume 25( Issue 5) pp:409-419
Publication Date(Web):
DOI:10.1002/poc.1931
Cope rearrangement mechanisms and the homoaromaticity of semibullvalene, barbaralane, and 1,5-methanosemibullvalene in the ground and lowest excited states were studied by ab initio methods. In the ground state, the rearrangement reactions of semibullvalene and barbaralane occurred concertedly through the transition states with C2v symmetry, and the transition states had a homoaromatic nature. In particular, the transition state of barbaralane exhibited the strongest homoaromaticity among the three systems treated here. On the other hand, for 7,8-methanosemibullvalene, the structure with C2v symmetry was not a transition state but one with a stable energy minimum. The energy minimum structure with C2v symmetry had a biradical character. The lowest excited states of semibullvalene and barbaralane were the excitation to the σ* anti-orbital, 1B2 and 1B1 states, and led to near di-allyl states. The lowest excitation state of 1,5-methanosemibullvalene had Cs symmetry and was the A″ state excitation in one side of two allyl parts. Copyright © 2011 John Wiley & Sons, Ltd.
Co-reporter:Tomoyuki Yamada, Taro Udagawa and Shogo Sakai
Physical Chemistry Chemical Physics 2010 vol. 12(Issue 15) pp:3799-3805
Publication Date(Web):2010/02/25
DOI:10.1039/B925166A
The potential-energy surfaces of the metallo-ene reactions of allyl-MgH and allyl-MgCl with ethylene were studied using ab initio molecular-orbital (MO) methods. The concerted path and the stepwise path of the metallo-ene reactions of allyl-MgH and allyl-MgCl with ethylene were identified and it was determined that the energy barriers on concerted paths of the metallo-ene reactions of allyl-MgH and allyl-MgCl with ethylene are lower than those on the stepwise paths. Furthermore, the concerted path of the metallo-ene reaction of allyl-MgCl with ethylene is more favorable than that of the allyl-MgH reaction system. The reaction mechanisms were analyzed using a CiLC method on the basis of CASSCF MOs. The driving force for the concerted path reactions arises from the migration process of the metal. The difference between the reactivity of allyl-MgH and allyl-MgCl can be explained with the reaction mechanism on the basis of the driving force.
Co-reporter:Shogo Sakai and Misaki Nishitani
The Journal of Physical Chemistry A 2010 Volume 114(Issue 43) pp:11807-11813
Publication Date(Web):October 5, 2010
DOI:10.1021/jp105860n
The mechanisms of the Myers−Saito cyclization and the Schmittel cyclization of hepta-1,2,4-triene-6-yne are studied by ab initio multireference MO methods (CASSCF and MRMP2 methods). For the Myers−Saito cyclization, two transition states with Cs and C1 symmetries are located. The transition state with C1 symmetry is only 1.5 kcal/mol lower in energy than that with Cs symmetry at the MRMP2 calculation level. The obtained activation energy at the transition state with C1 symmetry and the reaction energy are 16.6 and 16.2 kcal/mol exothermic, respectively. For the Schmittel cyclization, two transition states with Cs and C1 symmetry are also obtained. The transition state with C1 symmetry is 7.9 kcal/mol lower in energy than that with Cs symmetry. The transition state with C1 symmetry for Schmittel cyclization is 6.7 kcal/mol higher in energy than that for the Myers−Saito cyclization. The reaction mechanisms are analyzed by a CiLC-IRC method. The interactions of orbitals for the Myers−Saito and Schmittel cyclizations can be distinguished.
Co-reporter:Tomoyuki Yamada, Taro Udagawa and Shogo Sakai
Physical Chemistry Chemical Physics 2010 - vol. 12(Issue 15) pp:NaN3805-3805
Publication Date(Web):2010/02/25
DOI:10.1039/B925166A
The potential-energy surfaces of the metallo-ene reactions of allyl-MgH and allyl-MgCl with ethylene were studied using ab initio molecular-orbital (MO) methods. The concerted path and the stepwise path of the metallo-ene reactions of allyl-MgH and allyl-MgCl with ethylene were identified and it was determined that the energy barriers on concerted paths of the metallo-ene reactions of allyl-MgH and allyl-MgCl with ethylene are lower than those on the stepwise paths. Furthermore, the concerted path of the metallo-ene reaction of allyl-MgCl with ethylene is more favorable than that of the allyl-MgH reaction system. The reaction mechanisms were analyzed using a CiLC method on the basis of CASSCF MOs. The driving force for the concerted path reactions arises from the migration process of the metal. The difference between the reactivity of allyl-MgH and allyl-MgCl can be explained with the reaction mechanism on the basis of the driving force.