Amie K. Boal

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Name: Boal, Amie
Organization: Pennsylvania State University , USA
Department: Department of Chemistry
Title: Assistant(PhD)
Co-reporter:Andrew J. Mitchell;Noah P. Dunham;Jonathan A. Bergman;Bo Wang;Qin Zhu;Wei-chen Chang;Xinyu Liu
Biochemistry January 24, 2017 Volume 56(Issue 3) pp:441-444
Publication Date(Web):December 28, 2016
DOI:10.1021/acs.biochem.6b01173
Enzymatic installation of chlorine/bromine into unactivated carbon centers provides a versatile, selective, and environmentally friendly alternative to chemical halogenation. Iron(II) and 2-(oxo)-glutarate (FeII/2OG)-dependent halogenases are powerful biocatalysts that are capable of cleaving aliphatic C–H bonds to introduce useful functional groups, including halogens. Using the structure of the Fe/2OG halogenase, WelO5, in complex with its small molecule substrate, we identified a similar N-acyl amino acid hydroxylase, SadA, and reprogrammed it to halogenate its substrate, thereby generating a new chiral haloalkyl center. The work highlights the potential of FeII/2OG enzymes as platforms for development of novel stereospecific catalysts for late-stage C–H functionalization.
Co-reporter:Erica L. Schwalm;Tyler L. Grove;Squire J. Booker
Science 2016 Vol 352(6283) pp:309-312
Publication Date(Web):15 Apr 2016
DOI:10.1126/science.aad5367

An RNA methylase caught in the act

RNA methylation is important in RNA function and in antibiotic resistance. The RNA methylase RlmN is a dual-specificity enzyme that can act on ribosomal and transfer RNA (tRNA). RlmN is a radical S-adenosylmethionine (SAM) enzyme, which produces a protein/RNA cross-linked intermediate. Schwalm et al. determined the structure of RlmN cross-linked to a tRNA substrate and found that the enzyme recognizes the overall shape of the tRNA. Then it remodels the anticodon region to access the base that it methylates. The remodeling activity is likely to be key to the enzyme's dual specificity.

Science, this issue p. 309

Co-reporter:Wei-chen Chang;Yisong Guo;Chen Wang;Susan E. Butch;Amy C. Rosenzweig;Carsten Krebs;J. Martin Bollinger Jr.
Science 2014 Volume 343(Issue 6175) pp:1140-1144
Publication Date(Web):07 Mar 2014
DOI:10.1126/science.1248000

Carbapenems Through the Looking Glass

The carbapenem class of antibiotics is a critical weapon in the ongoing fight against drug-resistant bacteria. Microbial biosynthesis of these compounds, which contain a strained β-lactam ring motif, proceeds via a precursor that has the wrong configuration at one of the ring carbons. Chang et al. (p. 1140) combined x-ray crystallography with multiple spectroscopic probes to map out the mechanism by which the CarC enzyme inverts the precursor configuration to its mirror image.

Co-reporter:Laura M. K. Dassama, Carsten Krebs, J. Martin Bollinger Jr., Amy C. Rosenzweig, and Amie K. Boal
Biochemistry 2013 Volume 52(Issue 37) pp:
Publication Date(Web):August 7, 2013
DOI:10.1021/bi400819x
The class Ic ribonucleotide reductase (RNR) from Chlamydia trachomatis (Ct) employs a MnIV/FeIII cofactor in each monomer of its β2 subunit to initiate nucleotide reduction. The cofactor forms by reaction of MnII/FeII-β2 with O2. Previously, in vitro cofactor assembly from apo β2 and divalent metal ions produced a mixture of two forms, with Mn at site 1 (MnIV/FeIII) or site 2 (FeIII/MnIV), of which the more active MnIV/FeIII product predominates. Here we have addressed the basis for metal site selectivity by determining X-ray crystal structures of apo, MnII, and MnII/FeII complexes of Ct β2. A structure obtained anaerobically with equimolar MnII, FeII, and apoprotein reveals exclusive incorporation of MnII at site 1 and FeII at site 2, in contrast to the more modest site selectivity achieved previously. Site specificity is controlled thermodynamically by the apoprotein structure, as only minor adjustments of ligands occur upon metal binding. Additional structures imply that, by itself, MnII binds in either site. Together, the structures are consistent with a model for in vitro cofactor assembly in which FeII specificity for site 2 drives assembly of the appropriately configured heterobimetallic center, provided that FeII is substoichiometric. This model suggests that use of a MnIV/FeIII cofactor in vivo could be an adaptation to FeII limitation. A 1.8 Å resolution model of the MnII/FeII-β2 complex reveals additional structural determinants for activation of the cofactor, including a proposed site for side-on (η2) addition of O2 to FeII and a short (3.2 Å) MnII–FeII interionic distance, promoting formation of the MnIV/FeIV activation intermediate.
2-Pyrrolidineacetic acid, 5-carboxy-, (2R,5S)-
(2S)-1-tert-Butyl 2-methyl 5-hydroxypyrrolidine-1,2-dicarboxylate
1-Azabicyclo[3.2.0]heptane-2-carboxylicacid, 7-oxo-, (2S,5S)-
(R)-(-)-(2-Amino-1-hydroxyethyl)phosphonsaeure
2-Pyrrolidineacetic acid, 5-(methoxycarbonyl)-, trans-(±)-
1-Azabicyclo[3.2.0]hept-2-ene-2-carboxylicacid, 7-oxo-, (5R)-
1-(4-FLUOROPHENYL)-4-PIPERIDINAMINE