Co-reporter:Rong Hu, Ya-Ru Liu, Rong-Mei Kong, Michael J. Donovan, Xiao-Bing Zhang, Weihong Tan, Guo-Li Shen, Ru-Qin Yu
Biosensors and Bioelectronics 2013 Volume 42() pp:31-35
Publication Date(Web):15 April 2013
DOI:10.1016/j.bios.2012.10.037
The double-strand DNA (dsDNA) can act as an efficient template for the formation of copper nanoparticles (Cu NPs) with high fluorescence, whereas the single-strand DNA (ssDNA) cannot support the formation of Cu NPs. This difference in fluorescent signal generation can be used for the detection of nuclease cleavage activity. Thus, a label-free strategy for sensitive detection of nuclease has been developed. The sensor contains a complete complementary dsDNA which acts as a template for the formation of Cu NPs and generation of fluorescence signal. The enzyme S1 nuclease was taken as the model analyte. Upon addition of S1 nuclease into the sensing system, the DNA was cleaved into fragments, preventing the formation of the Cu NPs and resulting in low fluorescence. In order to achieve the system's best sensing performance, a series of experimental conditions were optimized. Under the optimized experimental conditions, the sensor exhibits excellent performance (e.g., a detection limit of 0.3 U mL−1 with high selectivity). This possibly makes it an attractive platform for the detection of S1 nuclease and other biomolecules.Highlights► A fluorescent probe based on double-strand DNA-templated formation of copper nanoparticles was developed for label-free nuclease enzyme detection. ► The probe shows a high sensitivity to S1 nuclease activity with a low detection limit of 0.3 U mL−1 observed. ► It also exhibits high selectivity to S1 nuclease over other nucleases.
Co-reporter:Jing-Wen Jin, Zeng-Ping Chen, Li-Mei Li, Raimundas Steponavicius, Suresh N. Thennadil, Jing Yang, and Ru-Qin Yu
Analytical Chemistry 2012 Volume 84(Issue 1) pp:320
Publication Date(Web):November 16, 2011
DOI:10.1021/ac202598f
Spectral measurements of complex heterogeneous types of mixture samples are often affected by significant multiplicative effects resulting from light scattering, due to physical variations (e.g., particle size and shape, sample packing, and sample surface, etc.) inherent within the individual samples. Therefore, the separation of the spectral contributions due to variations in chemical compositions from those caused by physical variations is crucial to accurate quantitative spectroscopic analysis of heterogeneous samples. In this work, an improved strategy has been proposed to estimate the multiplicative parameters accounting for multiplicative effects in each measured spectrum and, hence, mitigate the detrimental influence of multiplicative effects on the quantitative spectroscopic analysis of heterogeneous samples. The basic assumption of the proposed method is that light scattering due to physical variations has the same effects on the spectral contributions of each of the spectroscopically active chemical components in the same sample mixture. On the basis of this underlying assumption, the proposed method realizes the efficient estimation of the multiplicative parameters by solving a simple quadratic programming problem. The performance of the proposed method has been tested on two publicly available benchmark data sets (i.e., near-infrared total diffuse transmittance spectra of four-component suspension samples and near-infrared spectral data of meat samples) and compared with some empirical approaches designed for the same purpose. It was found that the proposed method provided appreciable improvement in quantitative spectroscopic analysis of heterogeneous mixture samples. The study indicates that accurate quantitative spectroscopic analysis of heterogeneous mixture samples can be achieved through the combination of spectroscopic techniques with smart modeling methodology.
Co-reporter:Han-Wen Cheng, Shuang-Yan Huan and Ru-Qin Yu
Analyst 2012 vol. 137(Issue 16) pp:3601-3608
Publication Date(Web):29 Jun 2012
DOI:10.1039/C2AN35448A
The development of ultrasensitive and rapid methods for the detection of bacterial spores is important for medical diagnostics of infectious diseases. While Surface-Enhanced Raman Spectroscopic (SERS) techniques have been increasingly demonstrated for achieving this goal, a key challenge is the development of sensitive and stable SERS substrates or probes. This Minireview highlights recent progress in exploring metal nanoparticle-based substrates, especially gold nanoparticle-based substrates, for the detection of biomarkers released from bacterial spores. One recent example involves assemblies of gold nanoparticles on a gold substrate for the highly sensitive detection of dipicolinic acid (DPA), a biomarker for bacterial spores such as Bacillus anthracis. This type of substrate exploits a strong SERS effect produced by the particle–particle and particle–substrate plasmonic coupling. It is capable of accurate speciation of the biomarker but also selective detection under various reactive or non-reactive conditions. In the case of detecting Bacillus subtilis spores, the limit of detection is quite comparable (0.1 ppb for DPA, and 1.5 × 109 spores per L (or 2.5 × 10−14 M)) with those obtained using silver nanoparticle-based substrates. Implications of the recent findings for improving the gold nanoparticle-based SERS substrates with ultrahigh sensitivity for the detection of bacterial spores are also discussed.
Co-reporter:Li-Ping Qiu, Zai-Sheng Wu, Guo-Li Shen, and Ru-Qin Yu
Analytical Chemistry 2011 Volume 83(Issue 8) pp:3050
Publication Date(Web):March 29, 2011
DOI:10.1021/ac103274j
The existing isothermal polymerization-based signal amplification assays are usually accomplished via two strategies: rolling circle amplification (RCA) and circular strand-displacement polymerization. In essence, the two techniques are based on cyclical nucleic acid strand-displacement polymerization (CNDP), limiting the application of isothermal polymerization in medical diagnosis and bioanalysis. In the present study, circular common target molecule (non-nucleic acid strand)-displacement polymerization (CCDP) is developed to amplify the fluorescence signal for biomolecule assays, extending isothermal polymerization to an aptameric system without any medium. Via combining an aptamer with a common hairpin DNA probe, we designed a self-blocked fluorescent bifunctional oligonucleotide probe (signaling probe) for the homogeneous parallel detection of two disease markers, PDGF-BB and the p53 gene. On the basis of CNDP and CCDP signal amplification, highly sensitive (e.g., detecting PDGF down to the concentration level of 1.8 × 10−10 M) and selective detection (no interference even in the presence of a significantly higher concentration (7−200 times) of nontarget proteins) was accomplished, and the linear response range was considerably widened. Furthermore, the bifunctional signaling probe exhibits impressive simplicity, convenience, and short detection time. Herein, the design of the signaling probe was described, factors influencing fluorescence signal were investigated, analytical properties were characterized in detail, and the assay application in a complex medium was validated. The proposed biosensing scheme as a proof-of-concept is expected to promote the application of oligonucleotide probes in basic research and medical diagnosis.
Co-reporter:Han-Wen Cheng, Yuan-Yuan Chen, Xin-Xin Lin, Shuang-Yan Huan, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2011 Volume 707(1–2) pp:155-163
Publication Date(Web):30 November 2011
DOI:10.1016/j.aca.2011.09.007
The detection of bacterial spores requires the capability of highly sensitive and biocompatible probes. This report describes the findings of an investigation of surface-enhanced Raman spectroscopic (SERS) detection of Bacillus subtilis spores using gold-nanoparticle (Au NP) based substrates as the spectroscopic probe. The SERS substrates are shown to be highly sensitive for the detection of B. subtilis spores, which release calcium dipicolinate (CaDPA) as a biomarker. The SERS bands of CaDPA released from the spores by extraction using nitric acid provide the diagnostic signal for the detection, exhibiting a limit of detection (LOD) of 1.5 × 109 spores L−1 (or 2.5 × 10−14 M). The LOD for the Au NP based substrates is quite comparable with that reported for Ag nanoparticle based substrates for the detection of spores, though the surface adsorption equilibrium constant is found to be smaller by a factor of 1–2 orders of magnitude than the Ag nanoparticle based substrates. The results have also revealed the viability of SERS detection of CaDPA released from the spores under ambient conditions without extraction using any reagents, showing a significant reduction of the diagnostic peak width for the detection. These findings have demonstrated the viability of Au NP based SERS substrates for direct use with high resolution and sensitivity as a biocompatible probe for the detection of bacterial spores.Graphical abstractHighlights► Gold nanoparticle-assembled substrates are demonstrated as a sensitive SERS probe. ► The SERS probe exhibits low LOD (1.5 × 109 spores L−1) for detection of biomarker. ► The SERS probe is capable of detection of CaDPA released from spores. ► The reduction of the diagnostic peak width offers high resolution and sensitivity.
Co-reporter:Lu Xu, De-Hua Deng, Jian-Hui Jiang, Ru-Qin Yu, Xiu-Mei Wu, Yu Zhao
Chemometrics and Intelligent Laboratory Systems 2011 Volume 109(Issue 2) pp:186-191
Publication Date(Web):15 December 2011
DOI:10.1016/j.chemolab.2011.09.005
For the first time, the principal actions or effects of individual herbs defined by traditional Chinese medicine (TCM) are considered to describe an herbal formula. Principal effects, natures, flavors, meridian affinity, lifting, lowering, floating and sinking (LLFS) and toxicity of single herbs are then combined with their dosages to generate formula descriptors in a linear manner. Herbal actions and properties defined by TCM theory are foundations of formula prescriptions. Therefore, the resulted formula descriptors will simulate a TCM doctor's knowledge well. Moreover, during the development of TCM for thousands of years, herbal actions and properties are well understood and one can generate descriptors for any TCM formula based on our method.To validate and demonstrate the usefulness of the newly proposed formula descriptors, a case study of quantitative formula–activity relationship (QFAR) of hypertension formulas is performed. Based on 64 general formula descriptors, least squares support vector machine (LS-SVM) is used to discriminate the effective hypertension formulas from the negative ones. An external validation set is used to optimize LS-SVM parameters and evaluate the performance of classification models. The prediction accuracy of independent positive formulas and negative formulas are 93.1% and 96.5%, respectively. The new formula descriptors and the corresponding QFAR model can be used for preliminary screening of effective formulas from the massive TCM formula data distributed in various literatures and databases.Highlights► Principal actions of individual herbs are used to describe an herbal formula. ► Descriptors for any TCM formula can be generated in a very simple linear manner. ► These descriptors can accurately discriminate effective and negative formulas.
Co-reporter:L. Xu;Q.-S. Xu;M. Yang;H.-Z. Zhang;C.-B. Cai;J.-H. Jiang;H.-L. Wu;R.-Q. Yu
Journal of Chemometrics 2011 Volume 25( Issue 2) pp:51-58
Publication Date(Web):
DOI:10.1002/cem.1323
Abstract
The present paper focuses on determining the number of PLS components by using resampling methods such as cross validation (CV), Monte Carlo cross validation (MCCV), bootstrapping (BS), etc. To resample the training data, random non-negative weights are assigned to the original training samples and a sample-weighted PLS model is developed without increasing the computational burden much. Random weighting is a generalization of the traditional resampling methods and is expected to have a lower risk of getting an insufficient training set. For prediction, only the training samples with random weights less than a threshold value are selected to ensure that the prediction samples have less influence on training. For complicated data, because the optimal number of PLS components is often not unique or readily distinguished and there might exist an optimal region of model complexity, the distribution of prediction errors can be more useful than a single value of root mean squared error of prediction (RMSEP). Therefore, the distribution of prediction errors are estimated by repeated random sample weighting and used to determine model complexity. RSW is compared with its traditional counterparts like CV, MCCV, BS and a recently proposed randomization test method to demonstrate its usefulness. Copyright © 2010 John Wiley & Sons, Ltd.
Co-reporter:Jian-Hui Wen, Ke-Jun Zhong, Li-Juan Tang, Jian-Hui Jiang, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu
Talanta 2011 Volume 84(Issue 1) pp:13-18
Publication Date(Web):15 March 2011
DOI:10.1016/j.talanta.2010.11.039
Representing a compound by a numerous structural descriptors becomes common in quantitative structure–activity relationship (QSAR) studies. As every descriptor carries molecular structure information more or less, it seems more advisable to investigate all the possible descriptor vectors rather than traditional variable selection when building a QSAR model. Based on particle swarm optimization (PSO) algorithm, a more flexible descriptor selection and model construction method variable-weighted support vector machine (VW-SVM) is proposed. The new strategy adopted in this paper is to weight all structural descriptors with continuous non-negative values rather than removing or reserving any ones arbitrarily. The manner of invoking PSO to seek non-negative weights of variables can be regarded as a process of searching optimized rescaling for every molecular structural descriptor. Moreover, PSO is employed to search the optimal parameters of VW-SVM model besides variable weights, enables the construction of a rational and adaptive parameter-free QSAR model according to the performance of the total model. Results obtained by investigating glycogen synthase kinase-3α inhibitors and carbonic anhydrase II inhibitors indicate VW-SVM can hold more useful structure information of compounds than other methods as optimally weighting all the descriptors, consequently leading to precisely QSAR models coupled with developed performance both in training and in prediction.
Co-reporter:Wen Du, Ting Gu, Li-Juan Tang, Jian-Hui Jiang, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu
Talanta 2011 Volume 85(Issue 3) pp:1689-1694
Publication Date(Web):15 September 2011
DOI:10.1016/j.talanta.2011.06.076
Co-reporter:Kejun Feng, Jingjin Zhao, Zai-Sheng Wu, Jianhui Jiang, Guoli Shen, Ruqin Yu
Biosensors and Bioelectronics 2011 Volume 26(Issue 7) pp:3187-3191
Publication Date(Web):15 March 2011
DOI:10.1016/j.bios.2010.12.024
Here a highly sensitive electrochemical method is described for the detection of point mutation in DNA. Polymerization extension reaction is applied to specifically initiate enzymatic electrochemical amplification to improve the sensitivity and enhance the performance of point mutation detection. In this work, 5′-thiolated DNA probe sequences complementary to the wild target DNA are assembled on the gold electrode. In the presence of wild target DNA, the probe is extended by DNA polymerase over the free segment of target as the template. After washing with NaOH solution, the target DNA is removed while the elongated probe sequence remains on the sensing surface. Via hybridizing to the designed biotin-labeled detection probe, the extended sequence is capable of capturing detection probe. After introducing streptavidin-conjugated alkaline phosphatase (SA-ALP), the specific binding between streptavidin and biotin mediates a catalytic reaction of ascorbic acid 2-phosphate (AA-P) substrate to produce a reducing agent ascorbic acid (AA). Then the silver ions in solution are reduced by AA, leading to the deposition of silver metal onto the electrode surface. The amount of deposited silver which is determined by the amount of wild target can be quantified by the linear sweep voltammetry (LSV). The present approach proved to be capable of detecting the wild target DNA down to a detection limit of 1.0 × 10−14 M in a wide target concentration range and identifying −28 site (A to G) of the β-thalassemia gene, demonstrating that this scheme offers a highly sensitive and specific approach for point mutation detection.
Co-reporter:Ziping Zhang, Aman Tang, Shuzhen Liao, Pengfei Chen, Zhaoyang Wu, Guoli Shen, Ruqin Yu
Biosensors and Bioelectronics 2011 Volume 26(Issue 7) pp:3320-3324
Publication Date(Web):15 March 2011
DOI:10.1016/j.bios.2011.01.006
We developed a novel electrochemical sensor for Hg2+ detection using two mercury-specific oligonucleotide probes and streptavidin-horseradish peroxidase (HRP) enzymatic signal amplification. The two mercury-specific oligonucleotide probes comprised a thiolated capture probe and a biotinated signal probe. The thiolated capture probe was immobilized on a gold electrode. In the presence of Hg2+, the thymine–Hg2+–thymine (T–Hg2+–T) interaction between the mismatched T–T base pairs directed the biotinated signal probe hybridizing to the capture probe and yielded a biotin-functioned electrode surface. HRP was then immobilized on the biotin-modified substrate via biotin–streptavidin interaction. The immobilized HRP catalyzed the oxidation of hydroquinone (H2Q) to benzoquinone (BQ) by hydrogen peroxide (H2O2) and the generated BQ was further electrochemically reduced at the modified gold electrode, producing a readout signal for quantitative detection of Hg2+. The results showed that the enzyme-amplified electrochemical sensor system was highly sensitive to Hg2+ in the concentration of 0.5 nM to 1 μM with a detection limit of 0.3 nM, and it also demonstrated excellent selectivity against other interferential metal ions.
Co-reporter:Jing-Lin He, Yi-Feng Yang, Guo-Li Shen, Ru-Qin Yu
Biosensors and Bioelectronics 2011 Volume 26(Issue 10) pp:4222-4226
Publication Date(Web):15 June 2011
DOI:10.1016/j.bios.2011.03.032
An electrochemical aptasensor based on Klenow fragment (KF) polymerase reaction that combines the aggregation of ferrocene-functionalized oligonucleotide has been developed successfully for cocaine detection. In the presence of cocaine, the recognition probe changed its hairpin conformation into the tripartite complex. The aptamer-cocaine complex gave a 3′-single-stranded tail sequence complementary to the surface-tethered capture probe. In KF polymerase reaction, the recognition probe served as a template for the extension of a capture probe. It requires a sample volume of 2 μL and is complete within 1 h. The ferrocene-appended oligonucleotide incorporated into the newly synthesized complementary probe leads to an electrochemical response. This sensitive detection of cocaine is due to a very low background signal and large signal enhancement up to 9-fold upon addition of analyte. It permits detection of as low as 200 μM cocaine. The simple and isothermal procedure does not require thermal cycling or special laboratory conditions, which makes it adaptable to low-cost and robust biosensing.
Co-reporter:Zaisheng Wu, Hui Zhou, Songbai Zhang, Xiaobing Zhang, Guoli Shen and Ruqin Yu
Chemical Communications 2010 vol. 46(Issue 13) pp:2232-2234
Publication Date(Web):18 Jan 2010
DOI:10.1039/B919585H
A pendulum-type DNA nanoswitch, which can perform a reversible on/off molecular motion at an about 9.1-nm scale is developed as a proof-of-concept, and the sequence-specific recognition and quantification of target olignucleotides are demonstrated utilizing this screening scheme.
Co-reporter:Zai-Sheng Wu, Songbai Zhang, Hui Zhou, Guo-Li Shen and Ruqin Yu
Analytical Chemistry 2010 Volume 82(Issue 6) pp:2221
Publication Date(Web):February 12, 2010
DOI:10.1021/ac901794w
A universal approach is proposed in this study for the development of an aptameric assay system for proteins based on aptamer structure-switching-triggered ligation-rolling circle amplification (L-RCA) upon target binding. The strategy chiefly depends on the competition for binding the aptamer probe between target protein and a complementary single-stranded DNA (CDNA) that can induce the circularization of the padlock probe. Introduction of target protein into the assay system inhibits the hybridization of the CDNA with the aptamer probe because of the formation of the target/aptamer duplex. The free CDNA can only hybridize with the padlock probe. With the assistance of DNA ligase, the padlock probe is circularized, and the subsequent RCA process can be accomplished by Phi 29 DNA polymerase. Each RCA product containing thousands of repeated sequences might hybridize with a large number of molecular beacons (detection probes), resulting in an enhanced fluorescence signal. In contrast, in the absence of target protein, no obvious change in the fluorescence intensity of the detection probe is observed. This signaling mode for target recognition and transduction events is based on the combination of aptamer recognition elements and L-RCA technology with high specificity and sensitivity. The proposed assay system not only exhibits excellent analytical characteristics (e.g., the detection limit on attomolar scale and a linear dynamic range of more than 3 orders of magnitude) but also possesses significant advantages over existing aptameric assays. The proposed strategy is universal since the sequences of aptamer probe, CDNA, and padlock probe could be easily designed to be compatible with the L-RCA based detection of other proteins without other conditions.
Co-reporter:Jing-Lin He, Zai-Sheng Wu, Hui Zhou, Hong-Qi Wang, Jian-Hui Jiang, Guo-Li Shen and Ru-Qin Yu
Analytical Chemistry 2010 Volume 82(Issue 4) pp:1358
Publication Date(Web):January 15, 2010
DOI:10.1021/ac902416u
A new fluorescence method based on aptamer-target interactions has been developed for cocaine detection with target-induced strand displacement. Here we describe new probes, the hairpin-probe and the single strand-probe (ss-probe), that possess two recognition sequences of cocaine aptamer. In the presence of cocaine, both probes would associate with the target to form a tripartite complex. The conformational change in the hairpin-probe causes the opening of a hairpin structure and the hybridization to primer. With polymerase and the dNTPs, the replication of the single-stranded domain of hairpin-probe triggers the process of primer extension. When the hairpin-probe is converted into a fully double-stranded form, the ss-probe and cocaine are displaced to bind another hairpin-probe and initiate new amplification cycles. Fluorescence signal generation would be observed upon SYBR Green I intercalating into the new DNA double helix. The new protocol design permits detection of as low as 2 nM cocaine in a closed tube, offering a convenient approach for a homogeneous assay. Compared with previously reported cocaine aptameric sensors, our new method is highly sensitive, selective, and economical.
Co-reporter:Chenhu Sun, Xueping Liu, Kejun Feng, Jianhui Jiang, Guoli Shen, Ruqin Yu
Analytica Chimica Acta 2010 Volume 669(1–2) pp:87-93
Publication Date(Web):11 June 2010
DOI:10.1016/j.aca.2010.04.057
In this work, an aptazyme-based electrochemical biosensor for the detection of adenosine is reported. Aptazyme activity was modulated by appending an “inhibitor” oligonucleotide strand containing a 32-base adenosine aptamer to the 8-17 DNAzyme. In the absence of adenosine, the DNAzyme could not form appropriate catalytic structure due to the binding with the inhibitor strand. Upon adenosine binding to the aptamer, the inhibitor strand was dissociated from the DNAzyme sequence. This allowed the DNAzyme to open and bind with the hairpin substrate, and DNAzyme activity was thereby induced, cleaving the substrate at its ribonucleotide site in the presence of Pb2+. Cleavage of the substrate yields two single-stranded products, one of which was ferrocene-tagged and acted as the signal probe. The thiolated probe modified on the gold electrode could capture the signal probe. As a result, the ferrocene (Fc) moiety was brought in close proximity to the electrode surface and the Faradaic current was observed. This electrochemical biosensor was proved to have a wide dynamic range from 5 nM to 2000 nM with a detection limit of 5 nM. The fabricated sensor is shown to exhibit high sensitivity and desirable selectivity, which might be promising for the rational construction of aptazyme-based biosensors and the determination of adenosine in clinical examination.
Co-reporter:Chun-Ran Tang, Zhong-hua Su, Bao-Gang Lin, Hao-Wen Huang, Yun-Long Zeng, Shuang Li, He Huang, Ya-Jing Wang, Chun-Xiang Li, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2010 Volume 678(Issue 2) pp:203-207
Publication Date(Web):30 September 2010
DOI:10.1016/j.aca.2010.08.034
We have developed a novel method for the determination of iodate based on the carboxymethyl cellulose-capped CdS quantum dots (QDs). Factors affecting the iodate detection were investigated, and the optimum conditions were determined. Under the optimum conditions, the relative fluorescence intensity of CdS quantum dots was linearly proportional to IO3− over a concentration range from 1.0 × 10−8 to 1.0 × 10−5 mol L−1 with a correlation coefficient of 0.9987 and a detection limit of 6.0 nmol L−1. Iodide, being oxidized by bromine to form iodate, was detected indirectly. The method was successfully applied to the determination of iodate and total amount of iodine in table salt samples. The related mechanism was also discussed.
Co-reporter:Qiu-Juan Ma, Xiao-Bing Zhang, Xu-Hua Zhao, Zhen Jin, Guo-Jiang Mao, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2010 Volume 663(Issue 1) pp:85-90
Publication Date(Web):17 March 2010
DOI:10.1016/j.aca.2010.01.029
A fluorescent probe 1 for Hg2+ based on a rhodamine–coumarin conjugate was designed and synthesized. Probe 1 exhibits high sensitivity and selectivity for sensing Hg2+, and about a 24-fold increase in fluorescence emission intensity is observed upon binding excess Hg2+ in 50% water/ethanol buffered at pH 7.24. The fluorescence response to Hg2+ is attributed to the 1:1 complex formation between probe 1 and Hg2+, which has been utilized as the basis for the selective detection of Hg2+. Besides, probe 1 was also found to show a reversible dual chromo- and fluorogenic response toward Hg2+ likely due to the chelation-induced ring opening of rhodamine spirolactam. The analytical performance characteristics of the proposed Hg2+-sensitive probe were investigated. The linear response range covers a concentration range of Hg2+ from 8.0 × 10−8 to 1.0 × 10−5 mol L−1 and the detection limit is 4.0 × 10−8 mol L−1. The determination of Hg2+ in both tap and river water samples displays satisfactory results.
Co-reporter:Huan Chen, Qing-Yuan Hu, Yue-Zheng, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2010 Volume 657(Issue 2) pp:204-209
Publication Date(Web):11 January 2010
DOI:10.1016/j.aca.2009.10.036
A novel piezoelelctric biosensor has been developed for cholera toxin (CT) detection based on the analyte-mediated surface-agglutination of ganglioside (GM1)-functionalized liposomes. To achieve a CT-specific agglutination at the surface, the gold electrode is modified by a GM1-functionalized supported lipid membrane via spontaneous spread of the liposomes on a self-assembled monolayer of a long-chain alkanethiol. In the presence of CT, the GM1-incorporated liposomes in assay medium will rapidly specifically agglutinate at the electrode surface through the binding of CT to GM1 on the electrode surface and the liposome interface. This results in an enormous mass loading on the piezoelelctric crystal as well as a significant increase of density and viscosity at the interface, thereby generating a decrease in frequency of the piezoelelctric crystal. The combination of mass loading with interfacial change in the surface-agglutination reaction allows the developed piezoelelctric biosensor to show substantial signal amplification in response to the analyte CT. The detection limit can be achieved as low as 25 ng mL−1 CT. This is the first demonstration on CT detection based on specific surface-agglutination of GM1-modified liposomes. The supported lipid layer based sensing interface can be prepared readily and renewably, making the developed technique especially useful for simple, reusable and sensitive determination of proteins.
Co-reporter:Han-Wen Cheng, Wei-Qi Luo, Guo-Li Wen, Shuang-Yan Huan, Guo-Li Shen and Ru-Qin Yu
Analyst 2010 vol. 135(Issue 11) pp:2993-3001
Publication Date(Web):28 Sep 2010
DOI:10.1039/C0AN00421A
Gold nanoparticles immobilized on gold surfaces (AuNPs/Au) function as an excellent SERS substrate for the detection of bacteria biomarkers. The possibility of the reactivity of bacteria biomarkers on such a nanoparticle-based substrate poses complications for the spectroscopic identification and quantification. This report describes new findings of an investigation of the SERS characteristics for the competitive adsorption of dipicolinic acid (DPA), which is an important biomarker from bacterial spores, and pyridine (Py), which is a possible decarboxylation product of DPA. The comparison focuses on the diagnostic region of 900–1100 cm−1 associated with the ring-breathing modes of the two molecules. While the SERS spectra in this region appeared to display some similarities between DPA and Py, distinctive differences in the detailed band characteristics were revealed for both individual and competitive adsorptions on the AuNPs/Au substrates. The fact that the equilibrium constant for the adsorption of Py on the substrate (∼8 × 105 M−1) is larger than that for DPA (∼2 × 105 M−1) in the measured concentration region is attributed to a stronger binding of Py to Au surface than that for DPA. The analysis of the differences has provided not only accurate speciation of the biomarker molecules on the gold nanoparticle based substrates under the SERS measurement conditions, but also has implications for expanding the application of the nanoparticle substrates for highly sensitive and selective detection of bacterial biomarkers under various reactive or non-reactive conditions.
Co-reporter:Juan Hu, Peng-Cheng Zheng, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu and Guo-Kun Liu
Analyst 2010 vol. 135(Issue 5) pp:1084-1089
Publication Date(Web):23 Feb 2010
DOI:10.1039/B920358C
A subattomolar HIV-1 DNA detection assay based on multilayer metal-molecule-metal nanojunctions (NJs) has been developed using surface-enhanced Raman spectroscopy (SERS). There is a two-step mechanism involved. First, label free target DNA facilitated the precipitation of Detection Unit I on the substrate through forming a sandwiched structure based on the capture probe, resulting in the first level amplification of target. Following that, the binding site on Detection probe I was further recognized by Detection Unit II. These two complementary probes acted as bricks to build up the multi-metal-molecule-metal NJs between Au nanoparticles (NPs) that not only created SERS “hot spots” by the conjugated Au NPs, but also obviously decreased the distance between Au NPs and Raman labels. Therefore, the Raman signal of the tag molecules on these detection probes was significantly enhanced due to the distance dependent electromagnetic enhancement (EM) of SERS. With regards to a HIV-1 DNA sequence, the platform could detect a concentration as low as 10−19 M (∼10−23 mol) with the ability of single base mismatch discrimination.
Co-reporter:Jing-Lin He, Zai-Sheng Wu, Peng Hu, Sui-Ping Wang, Guo-Li Shen and Ru-Qin Yu
Analyst 2010 vol. 135(Issue 3) pp:570-576
Publication Date(Web):15 Jan 2010
DOI:10.1039/B922382G
Here we describe the biocatalytic growth of high-density gold agglomerates on a gold electrode surface to form a carrier for aptamer probe immobilization. The present approach provides a simple strategy to promote the seed-mediated deposition of Au from AuCl4− onto surface-attached 12 nm diameter Au nanoparticles (AuNPs) in the presence of reductive coenzyme and surfactant. The growth process was studied by electrochemical impedance spectroscopy (EIS) and scanning electron microscopy (SEM). This nanostructured platform is effective and prospective toward the aptamer probe immobilization. For the nice performance of enhanced substrate, the aptamer-sensing interface showed excellent applicability under the investigations such as alternating current voltammetry (ACV) and surface-enhanced Resonance Raman scattering (SERRS) spectra.
Co-reporter:Zai-Sheng Wu, Peng Hu, Hui Zhou, Guoli Shen, Ruqin Yu
Biomaterials 2010 31(7) pp: 1918-1924
Publication Date(Web):
DOI:10.1016/j.biomaterials.2009.11.054
Co-reporter:Li-Ping Qiu, Cun-Chang Wang, Peng Hu, Zai-Sheng Wu, Guo-Li Shen, Ru-Qin Yu
Talanta 2010 Volume 83(Issue 1) pp:42-47
Publication Date(Web):15 November 2010
DOI:10.1016/j.talanta.2010.08.036
In this study, a highly selective, label-free electrochemical immunoassay strategy based on the charge transport through the multilayer films associated with the electrocatalytic reduction of [Fe(CN)6]3− is proposed using human immunoglobulin G (human IgG) as the model analyte. The antibody–antigen complex formed on the sensing interface can efficiently induce change of the surface charge characteristics, the conductivity of multilayer film and/or electron transfer distance, resulting in an immunoreaction signal. The current reduction is proportional to the amount of analyte. Under the optimized experimental conditions, the proposed sensing strategy provides a linear dynamic range from 10 to 104 ng mL−1 and a detection limit of 3 ng mL−1, indicating an improved analytical performance. This possibly makes it a potential alternative in bioanalysis of proteins and other molecules.
Co-reporter:Chen-Bo Cai, Lu Xu, Qing-Juan Han, Hai-Long Wu, Jin-Fang Nie, Hai-Yan Fu, Ru-Qin Yu
Talanta 2010 Volume 81(Issue 3) pp:799-804
Publication Date(Web):15 May 2010
DOI:10.1016/j.talanta.2010.01.018
The paper focuses on solving a common and important problem of NIR quantitative analysis in multi-component systems: how to significantly reduce the size of the calibration set while not impairing the predictive precision. To cope with the problem orthogonal discrete wavelet packet transform (WPT), the least correlation design and correlation coefficient test (r-test) have been combined together. As three examples, a two-component carbon tetrachloride system with 21 calibration samples, a two-component aqueous system with 21 calibration samples, and a two-component aqueous system with 41 calibration samples have been treated with the proposed strategy, respectively. In comparison with some previous methods based on much more calibration samples, the results out of the strategy showed that the predictive ability was not obviously decreased for the first system while being clearly strengthened for the second one, and the predictive precision out of the third one was even satisfactory enough for most cases of quantitative analysis. In addition, all important factors and parameters related to our strategy are discussed in detail.
Co-reporter:Ziping Zhang, Jinyan Zhou, Aman Tang, Zhaoyang Wu, Guoli Shen, Ruqin Yu
Biosensors and Bioelectronics 2010 Volume 25(Issue 8) pp:1953-1957
Publication Date(Web):15 April 2010
DOI:10.1016/j.bios.2010.01.013
A novel scheme for scanning electrochemical microscopy (SECM) assay of DNA based on hairpin probe and enzymatic amplification biosensor was described. In this method, streptavidin–horseradish peroxidase (HRP) was captured by double-stranded DNA (ds-DNA) modified gold substrate via biotin–streptavidin interaction after hybridization of target DNA to the immobilized hairpin probe functioned with a biotin at its 3′ end. In the presence of H2O2, hydroquinone (H2Q) was oxidized to benzoquinone (BQ) at the modified substrate surface through the HRP catalytic reaction, and the generated BQ corresponding to the amount of target DNA was reduced in solution by a SECM tip. The resulting reduction current allowed concentration detection of target DNA and SECM imaging of hybridization between the target DNA and the immobilized hairpin probe. The detection limit of this method was as low as 17 pM for complementary target DNA and it had good selectivity to discriminate between the complementary sequence and one containing base mismatches.
Co-reporter:Jing-Lin He, Zai-Sheng Wu, Song-Bai Zhang, Guo-Li Shen, Ru-Qin Yu
Talanta 2010 Volume 80(Issue 3) pp:1264-1268
Publication Date(Web):January 2010
DOI:10.1016/j.talanta.2009.09.019
To our knowledge, we report the first fluorescence aptasensor for detecting human neutrophil elastase (HNE) in homogeneous solution. The biosensor contains a short DNA scrambled sequence strand (SS) complementary to part of the aptamer sequence or the loop of molecular beacon (MB). The aptamer-HNE recognition event involves competition between the molecular beacon and loose HNE aptamer for the binding the short DNA strand. The new biosensor can detect as little as 0.34 nM of HNE, and the response is linear in the tested concentration range of 0.34–68 nM with the detection limit of 47 pM.
Co-reporter:Chenhu Sun, Liangliang Zhang, Jianhui Jiang, Guoli Shen, Ruqin Yu
Biosensors and Bioelectronics 2010 Volume 25(Issue 11) pp:2483-2489
Publication Date(Web):15 July 2010
DOI:10.1016/j.bios.2010.04.012
This paper describes a novel electrochemical DNA sensor for the simple, sensitive and specific detection of nucleic acids based on proximity-dependent DNA ligation assays with the DNAzyme amplification of hairpin substrate signal. A long DNA strand contains the catalytic motif of Mg2+-dependent 10-23 DNAzyme, acting as the recognition probe. When the target DNA was introduced into the system, part of it was complementary to 5′-end of the recognition probe, resulting in the ligation of a stable duplex, the unbinded part of the target DNA was acted as one binding arm for the DNAzyme. This duplex containing a complete 10-23 DNAzyme structure could cleave the purine–pyrimidine cleavage site of the hairpin substrate, which resulted in the fragmentation of the hairpin structure and the release of two single-stranded nucleic acids, one of which was biotinylated and acted as the signal probe. An immobilized thiolated capture probe could bind with the signal probe, using biotin as a tracer in the signal probe, and streptavidin–alkaline phosphatase (SA–ALP) as reporter molecule. The activity of the immobilized enzyme was voltammetrically determined by measuring the amount of 1-naphthol generated after 5 min of enzymatic dephosphorylation of 1-naphthyl phosphate. The results revealed that the sensor showed a sensitive response to complementary target sequences of H. pylori in a concentration range from 100 fM to 1 nM, with a detection limit of 50 fM. In addition, the sensing system could discriminate the complementary sequence from mismatched sequences, with high sensitivity and reusability.
Co-reporter:Rong-Mei Kong, Xiao-Bing Zhang, Liang-Liang Zhang, Xiao-Yong Jin, Shuang-Yan Huan, Guo-Li Shen and Ru-Qin Yu
Chemical Communications 2009 (Issue 37) pp:5633-5635
Publication Date(Web):05 Aug 2009
DOI:10.1039/B911163H
A highly selective electrochemical biosensor for the ultrasensitive detection of Hg2+ in aqueous solution has been developed based on the strong and specific binding of Hg2+ by two DNAthymine bases (T–Hg2+–T) and the use of AuNP-functionalized reporter DNA to achieve signal amplification.
Co-reporter:Juan Hu, Peng-Cheng Zheng, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu and Guo-Kun Liu
Analytical Chemistry 2009 Volume 81(Issue 1) pp:87
Publication Date(Web):December 2, 2008
DOI:10.1021/ac801431m
We have developed an electrostatic interaction based biosensor for thrombin detection using surface-enhanced Raman spectroscopy (SERS). This method utilized the electrostatic interaction between capture (thrombin aptamer) and probe (crystal violet, CV) molecules. The specific interaction between thrombin and aptamer could weaken the electrostatic barrier effect from the negative charged aptamer SAMs to the diffusion process of the positively charged CV from the bulk solution to the Au nanoparticle surface. Therefore, the more the bound thrombin, the more the CV molecules near the Au nanoparticle surface and the stronger the observed Raman signal of CV, provided the Raman detections were set at the same time point for each case. This procedure presented a highly specific selectivity and a linear detection of thrombin in the range from 0.1 nM to 10 nM with a detection limit of about 20 pM and realized the thrombin detection in human blood serum solution directly. The electrostatic interaction based technique provides an easy and fast-responding optical platform for a “signal-on” detection of proteins, which might be applicable for the real time assay of proteins.
Co-reporter:Han-Wen Cheng, Shuang-Yan Huan, Hai-Long Wu, Guo-Li Shen and Ru-Qin Yu
Analytical Chemistry 2009 Volume 81(Issue 24) pp:9902
Publication Date(Web):November 23, 2009
DOI:10.1021/ac9014275
The development of ultrasensitive and rapid methods for the detection of dipicolinic acid (DPA), a biomarker for bacterial spores including Bacillus anthracis, is increasingly important. This paper reports the results of an investigation of surface enhanced Raman spectroscopy (SERS) based ultrasensitive detection of DPA using a gold nanoparticle/polyvinylpyrrolidone/gold substrate (AuNPs/PVP/Au). The strong SERS effect of this substrate exploits the particle−particle and particle−substrate plasmonic coupling, which is optimized by manipulating the diameter of the nanoparticles (50−70 nm). The correlation between the SERS intensity of the diagnostic band and the DPA concentration (0.1 ppb to 100 ppm) was shown to exhibit two linear regions, i.e., the low- (<0.01 ppm) and high-concentration (>1 ppm) regions, with an intermediate region in between. The presence of a linear relationship in the low-concentration region was observed for the first time in SERS detection of DPA. A detection limit of 0.1 ppb was obtained from the substrates with 60 nm sized Au NPs, which is, to our knowledge, the lowest detection limit reported for DPA using this type of SERS substrate. This finding was also supported by the estimated enhancement factor (∼106) and a large adsorption equilibrium constant for the low-concentration region (1.7 × 107 M−1). The adsorption characteristics of DPA on the SERS substrates were analyzed in terms of monolayer and multilayer adsorption isotherms to gain insights into the correlation between the SERS intensity and the DPA concentration. The observed transition from the low- to high-concentration linear regions was found to correspond to the transition from a monolayer to multilayer adsorption isotherm, which was in agreement with the estimated minimum DPA concentration for a monolayer coverage (∼0.01 ppm).
Co-reporter:Yu Yang, Jianhui Jiang, Guoli Shen, Ruqin Yu
Analytica Chimica Acta 2009 Volume 636(Issue 1) pp:83-88
Publication Date(Web):16 March 2009
DOI:10.1016/j.aca.2009.01.038
An optical sensor for mercury ion (Hg2+), based on quenching the fluorescence of the sensing reagent porphyrin immobilized in plasticized poly(vinyl chloride) (PVC) membrane, has been developed. The responses to mercury ion were compared for the sensors modified with three porphyrin compounds including 5,10,15,20-tetraphenylporphyrin (TPP), tetra(p-dimethylaminophenyl)porphyrin (TDMAPP) and tetra(N-phenylpyrazole) porphyrin (TPPP). Among them, TDMAPP showed the most remarkable response to Hg2+. The drastic decrease of the TDMAPP fluorescence intensity was attributed to the formation of a complex between TDMAPP and Hg2+, which has been utilized as the fabrication basis of a Hg2+-sensitive fluorescence sensor. The analytical performance characteristics of the TDMAPP modified sensor was investigated. The response mechanism, especially involving the response difference of three porphyrin compounds, was discussed in detail. The sensor can be applied to the quantification of Hg2+ with a linear range covering from 4.0 × 10−8 mol L−1 to 4.0 × 10−6 mol L−1. The limit of detection was 8.0 × 10−9 mol L−1. The sensor exhibited excellent reproducibility, reversibility and selectivity. Also, the TDMAPP-based sensor was successfully used for the determination of Hg2+ in environmental water samples.
Co-reporter:Lu Xu, Xiao-Ping Yu, Xiu-Lian Lu, Yi-Hang Wu, Hai-Long Wu, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2009 Volume 644(1–2) pp:25-29
Publication Date(Web):30 June 2009
DOI:10.1016/j.aca.2009.04.030
In the traditional framework of multivariate spectroscopic calibration, the most popular method, partial least squares (PLS), shrinks the regression coefficients based on the information of training sample concentrations. Motivated by the concept of parallel calibration, the second direction for shrinkage of regression coefficients, the direction towards unknown sample spectra is investigated in this paper. A different multivariate calibration method, parallel calibration model based on partial least squares, PCPLS is proposed. With both theoretical support and analysis of some real data sets, it is demonstrated that the second shrinkage direction is at least as natural and necessary as the traditional one. An interesting difference of the proposed method from traditional methods is the involvement of unknown sample spectra and consideration of their error in the training process. Some new related problems and potential applications of this method are also briefly discussed.
Co-reporter:Jing-Lin He, Zai-Sheng Wu, Song-Bai Zhang, Guo-Li Shen and Ru-Qin Yu
Analyst 2009 vol. 134(Issue 5) pp:1003-1007
Publication Date(Web):12 Mar 2009
DOI:10.1039/B812450G
In this paper, we demonstrate a fluorescence immunoglobulin E (IgE) assay probe based on a DNA aptamer. A Texas red-labeled short DNA strand (T-DNA) complementary with part of the IgE aptamer sequence was used to produce the fluorescence enhancement effected upon the binding of IgE to the aptamer. Another short DNA strand labeled with dabcyl quencher (Q-DNA) complementary with part of the aptamer sequence nearby the T-DNA location was used to lower the background fluorescence. The IgE can be detected in the concentration range from 9.2 × 10−11 to 3.7 × 10−8 mol L−1 with a detection limit of 5.7 × 10−11 mol L−1.
Co-reporter:Li-Juan Tang, Wen Du, Hai-Yan Fu, Jian-Hui Jiang, Hai-Long Wu, Guo-Li Shen and Ru-Qin Yu
Journal of Chemical Information and Modeling 2009 Volume 49(Issue 8) pp:2002-2009
Publication Date(Web):July 31, 2009
DOI:10.1021/ci900032q
One problem with discriminant analysis of microarray data is representation of each sample by a large number of genes that are possibly irrelevant, insignificant, or redundant. Methods of variable selection are, therefore, of great significance in microarray data analysis. A new method for key gene selection has been proposed on the basis of interval segmentation purity that is defined as the purity of samples belonging to a certain class in intervals segmented by a mode search algorithm. This method identifies key variables most discriminative for each class, which offers possibility of unraveling the biological implication of selected genes. A salient advantage of the new strategy over existing methods is the capability of selecting genes that, though possibly exhibit a multimodal distribution, are the most discriminative for the classes of interest, considering that the expression levels of some genes may reflect systematic difference in within-class samples derived from different pathogenic mechanisms. On the basis of the key genes selected for individual classes, a support vector machine with block-wise kernel transform is developed for the classification of different classes. The combination of the proposed gene mining approach with support vector machine is demonstrated in cancer classification using two public data sets. The results reveal that significant genes have been identified for each class, and the classification model shows satisfactory performance in training and prediction for both data sets.
Co-reporter:Yan-Ping Zhou, Li-Juan Tang, Jian Jiao, Dan-Dan Song, Jian-Hui Jiang and Ru-Qin Yu
Journal of Chemical Information and Modeling 2009 Volume 49(Issue 5) pp:1144-1153
Publication Date(Web):April 14, 2009
DOI:10.1021/ci800374h
The configuration of classification and regression trees (CART) used to include tree-growing by greedy recursive partitioning, which selects the splitting parameters (i.e., splitting variables and values) involved in tree, and tree-pruning, which aims to obtain a final tree of right size. This method is successful for most applications; however, it presents some well-known limitations and drawbacks, such as, less comprehensibility, inclination to overfitting, and suboptima. In the present study, the modified discrete particle swarm optimization method was invoked to adaptively configure the globally optimal CART (MPSOCART) via simultaneously selecting the optimal splitting parameters in CART and the appropriate structure of CART. A new objective function was formulated to decide the appropriate CART architecture and the optimum splitting parameters. The proposed MPSOCART was applied to predict the bioactivities of flavonoid derivatives and inhibitory activities of inhibitors of epidermal growth factor receptor tyrosine kinase, compared with partial least-squares and CART induced by greedy recursive partitioning. The comparison revealed that MPSO was a useful tool for inducing a globally optimal CART, which converges fast to the optimal solution and avoid overfitting in great extent.
Co-reporter:Yali Bu, Shuangyan Huan, Xiangjiang Liu, Guoli Shen, Ruqin Yu
Vibrational Spectroscopy 2009 Volume 49(Issue 1) pp:38-42
Publication Date(Web):22 January 2009
DOI:10.1016/j.vibspec.2008.04.011
Multiple-angle-of-incidence polarization infrared reflection-absorption spectroscopy (MAI-PIRRAS) has been used to study the adsorption mode and structural properties of 6-Mercaptopurine (6MP) self-assembled monolayers (SAMs) on smooth silver surface. The in-plane vibrations of the 6MP SAMs show some enhancement compared with the spectrum of the solid powder of 6MP, while the out-of-plane vibrations are very weak. Assignments of the observed bands by DFT calculations show that both the thiol form and the tautomer of 6MP exist in the SAMs and adopt the S atom and the N7 or N1 atom anchoring the silver surface. In order to eliminate the influence of the angle of the incidence and obtain direct influence of the orientation of the 6MP to the spectral intensity, the adsorption intensity of the SAMs is multiplied by cos θ to obtain corrected spectra. The adsorption intensity attains to the maximum at 35–40° other than near the grazing angle. The characteristics of the spectra suggest that the SAMs of 6MP are arranged orderly in a parallel fashion with a dihedral angle of 35–40° between the ring plane and the silver surface.
Co-reporter:Huiwang WU;Xueping LIU;Jianhui JIANG;Guoli SHEN ;Ruqin YU
Chinese Journal of Chemistry 2009 Volume 27( Issue 8) pp:1543-1547
Publication Date(Web):
DOI:10.1002/cjoc.200990260
Abstract
A highly selective fluorescence sensor was developed for Hg(II) ion detection in aqueous solutions based on the selective binding of Hg(II) ions with a pair of thymine-thymine mismatch. The sensor consists of two DNA probes functionalized with a fluorophore (fluorescein, F) and a quencher (tetramethyl rhodamine, Q) moiety separately. This pair of DNA probes contains two pairs of thymine-thymine mismatches used to detect Hg(II) ions. In the presence of Hg(II) ions, thymine-Hg2+-thymine was formed between thymine residues of probes. From that, the interaction of the two DNA probes increased. Thus, the DNA probes formed a double-stranded structure. Both the fluorophore and quencher were brought close to each other leading to the fluorescence resonance energy transfer (FRET) between F and Q. Under the optimum conditions, the sensor was used to detect the Hg(II) ions from 50 to 1000 nmol·L−1 with a regression equation y=5281.13−1650.56 lg[Hg2+] (R2=0.985). The linear range covers 100 to 500 nmol·L−1, and the limit of detection (LOD) is 79 nmol·L−1. The disturbance of some co-existing metal ions was explored, and no significant fluorescence quenching in the presence of 1.0 μmol·L−1 other metal ions was observed. The fluorescence sensor has good sensitivity and selectivity for Hg(II) ions providing a rapid, simple and low cost method for the detection of mercury(II) ions in aqueous solutions.
Co-reporter:Xueping Liu;Zhenhua Zhou;Liangliang Zhang;Zhongyang Tan;Guoli Shen;Ruqin Yu
Chinese Journal of Chemistry 2009 Volume 27( Issue 10) pp:1855-1859
Publication Date(Web):
DOI:10.1002/cjoc.200990310
Abstract
A simple and rapid colorimetric approach for the determination of adenosine has been developed via target inducing aptamer structure switching, thus leading to Au colloidal solution aggregation. In the absence of the analytes, the aptamer/gold nanoparticle (Au NP) solution remained well dispersed under a given high ionic strength condition in that the random-coil aptamer was readily wrapped on the surface of the Au NPs, which resulted in the enhancement of the repulsive force between the nanoparticles due to the high negative charge density of DNA molecules. While in the presence of adenosine, target-aptamer complexes were formed and the conformation of the aptamer was changed to a folded structure which disfavored its adsorption on the Au NP surface, thus leading to the reduction of the negative charge density on each Au NP and then the reduced degree of electrostatic repulsion between Au nanoparticles. As a result, the aggregation of the Au colloidal solution occurred. The changes of the absorption spectrum could be easily monitored by a UV-Vis spectrophotometer. A linear correlation exists between the ratio of the absorbance of the system at 522 to 700 nm (A522 nm/A700 nm) and the concentration of adenosine between 100 nmol·L−1 and 10 µmol·L−1, with a detection limit of 51.5 nmol·L−1.
Co-reporter:Pengcheng Zheng;Juan Hu;Guoli Shen;Jianhui Jiang;Ruqin Yu;Guokun Liu
Chinese Journal of Chemistry 2009 Volume 27( Issue 11) pp:2137-2144
Publication Date(Web):
DOI:10.1002/cjoc.200990358
Abstract
By simply adding ascorbic acid in advance of AgNO3, the size and shape controllable Au/Ag bimetallic nanoparticles (NP) were prepared in the traditional Au growth solution free of seed at room temperature. The size distribution of NP is well uniform with ca. 10%–15% standard deviation in diameter. By changing CTAB concentration, the size and shape of NPs are tunable. After researching the surface-enhanced Raman spectroscopy (SERS) behavior of the prepared NPs, an enhancement factor varied from 4.3×104 to 1.1×105 was obtained for the NP centered at ca. (64±8) nm. Electrochemical cyclic voltammetric results revealed that the so formed nanoparticles were Au riched Au/Ag bimetallic NP, and this formation might be due to the disproportionation reaction of Au+ prompted by Ag+ and the under potential deposition process of Ag+ on Au.
Co-reporter:Xue-Ping Liu, Ya-Juan Deng, Xiao-Yong Jin, Li-Guo Chen, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu
Analytical Biochemistry 2009 Volume 389(Issue 1) pp:63-68
Publication Date(Web):1 June 2009
DOI:10.1016/j.ab.2009.03.019
A convenient, specific, and highly sensitive electrochemical immunosensor based on an indirect competitive assay format was developed for the determination of ochratoxin A (OTA), a common toxic contaminant in various kinds of agricultural products. The sensing substrate was prepared using a gold electrode modified with a self-assembled monolayer of 1,6-hexanedithiol that mediated the assembly of a gold colloid layer, which could enhance the surface loading of OTA–ovalbumin conjugate and improve the sensitivity in electrochemical readouts. After competition of the limited anti-OTA mouse monoclonal antibody between immobilized hapten and OTA analyte in sample solution, alkaline phosphatase (ALP)-labeled horse anti-mouse immunoglobulin G (IgG) antibody was selectively bound onto the surface of the electrode, affording an indicator for OTA concentration in the sample. Electrochemical response arising from the oxidation of enzymatic product of 1-naphthyl phosphate was observed to be inversely proportional to OTA concentration in the range from 10 pg/ml to 100 ng/ml with a detection limit as low as 8.2 pg/ml. Furthermore, a negligible matrix effect and good recoveries were obtained in the determination of corn samples, evidencing the feasibility of the proposed method for accurate determination of OTA in corn samples.
Co-reporter:Li-Juan Tang, Jian-Hui Jiang, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu
Talanta 2009 Volume 79(Issue 2) pp:260-267
Publication Date(Web):15 July 2009
DOI:10.1016/j.talanta.2009.03.044
One problem with discriminant analysis of microarray data is representation of each sample by a large number of genes that are possibly irrelevant, insignificant or redundant. Methods of variable selection are, therefore, of great significance in microarray data analysis. To circumvent the problem, a new gene mining approach is proposed based on the similarity between probability density functions on each gene for the class of interest with respect to the others. This method allows the ascertainment of significant genes that are informative for discriminating each individual class rather than maximizing the separability of all classes. Then one can select genes containing important information about the particular subtypes of diseases. Based on the mined significant genes for individual classes, a support vector machine with local kernel transform is constructed for the classification of different diseases. The combination of the gene mining approach with support vector machine is demonstrated for cancer classification using two public data sets. The results reveal that significant genes are identified for each cancer, and the classification model shows satisfactory performance in training and prediction for both data sets.
Co-reporter:Chen-Bo Cai, Qing-Juan Han, Li-Juan Tang, Lu Xu, Hai-Long Wu, Jian-Hui Jiang, Ru-Qin Yu
Talanta 2009 Volume 78(Issue 2) pp:337-341
Publication Date(Web):30 April 2009
DOI:10.1016/j.talanta.2008.11.022
An unlooked-for experimental observation that in near-infrared spectroscopy (NIR) the absorption peak of the second overtone of aniline adsorbed by 13X molecular sieve nearly disappeared led us investigate a fundamental question: the behavior of NIR when the outside space surrounding a molecule is too small to allow the molecule to vibrate freely. Through NIR of various organic compounds adsorbed by different porous inorganic materials like 13X molecular sieve, silica gel and active aluminium oxide, and NIR of supramolecular cyanuric acid-melamine, we can reasonably confirm a theoretical inference that in the micro-environment above, all intensities of NIR absorbance decrease, and the second overtone decreases more than the first overtone does. Furthermore, one distinct feature of NIR, higher sensitivity to the size of micro-environmental space as compared with mid-infrared (MIR), and its potential application to the study of supramolecular structure are outlined by our experiments.
Co-reporter:Qiu-Juan Ma, Xiao-Bing Zhang, Xu-Hua Zhao, Yi-Jun Gong, Jian Tang, Guo-Li Shen, Ru-Qin Yu
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 2009 Volume 73(Issue 4) pp:687-693
Publication Date(Web):15 August 2009
DOI:10.1016/j.saa.2009.03.023
In the present paper, we describe the fabrication and analytical characteristics of fluorescence-based zinc ion-sensing glass slides. To construct the sensor, a benzoxazole derivative 4-benzoxazol-2′-yl-3-hydroxyphenyl allyl ether (1) with a terminal double bond was synthesized and copolymerized with 2-hydroxyethyl methacrylate (HEMA) on the activated surface of glass slides by UV irradiation. In the absence of Zn2+ at pH 7.24, the resulting optical sensor emitted fluorescence at 450 nm via excited-state intramolecular proton transfer (ESIPT). Upon binding with Zn2+, the ESIPT process was inhibited resulting in a 46 nm blue-shift of fluorescence emission. Thus, the proposed sensor can behave as a ratiometric fluorescent sensor for the selective detection of Zn2+. In addition, the sensor shows nice selectivity, good reproducibility and fast response time. Cd2+ did not interfere with Zn2+ sensing. The sensing membrane demonstrates a good stability with a lifetime of at least 3 months. The linear response range covers a concentration range of Zn2+ from 8.0 × 10−5 to 4.0 × 10−3 mol/L and the detection limit is 4.0 × 10−5 mol/L. The determination of Zn2+ in both tap and river water samples shows satisfactory results.
Co-reporter:Zhi-Xiang Han, Hong-Yuan Luo, Xiao-Bing Zhang, Rong-Mei Kong, Guo-Li Shen, Ru-Qin Yu
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 2009 Volume 72(Issue 5) pp:1084-1088
Publication Date(Web):June 2009
DOI:10.1016/j.saa.2009.01.003
Quinolin-8-ol p-[10′,15′,20′-triphenyl-5′-porphyrinyl]benzoate (1) was synthesized for the first time and developed as a ratiometric fluorescent chemosensor for recognition of Hg2+ ions in aqueous ethanol with high selectivity. The 1–Hg2+ complexation quenches the fluorescence of porphyrin at 646 nm and induces a new fluorescent enhancement at 603 nm. The fluorescent response of 1 towards Hg2+ seems to be caused by the binding of Hg2+ ion with the quinoline moiety, which was confirmed by the absorption spectra and 1H NMR spectrum. The fluorescence response fits a Hill coefficient of 1 (1.0308), indicating the formation of a 1:1 stoichiometry for the 1–Hg2+ complex. The analytical performance characteristics of the chemosensor were investigated. The sensor shows a linear response toward Hg2+ in the concentration range of 3 × 10−7 to 2 × 10−5 M with a limit of detection of 2.2 × 10−8 M. Chemosensor 1 shows excellent selectivity to Hg2+ over transition metal cations except Cu2+, which quenches the fluorescence of 1 to some extent when it exists at equal molar concentration. Moreover, the chemosensor are pH-independent in 5.0–9.0 and show excellent selectivity for Hg2+ over transition metal cations.
Co-reporter:Qiu-Juan Ma, Xiao-Bing Zhang, Yan Zhao, Chun-Yan Li, Zhi-Xiang Han, Guo-Li Shen, Ru-Qin Yu
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 2009 Volume 71(Issue 5) pp:1683-1687
Publication Date(Web):January 2009
DOI:10.1016/j.saa.2008.06.020
N-Methyl-α,β,γ,δ-tetraphenylporphine (NMTPPH) has been used to detect trace amount of zinc ions in ethanol–water solution by fluorescence spectroscopy. The fluorescent probe undergoes a fluorescent emission intensity enhancement upon binding to zinc ions in EtOH/H2O (1:1, v/v) solution. The fluorescence enhancement of NMTPPH is attributed to the 1:1 complex formation between NMTPPH and Zn(II) which has been utilized as the basis for the selective detection of Zn(II). The linear response range covers a concentration range of Zn(II) from 5.0 × 10−7 to 1.0 × 10−5 mol/L and the detection limit is 1.5 × 10−7 mol/L. The fluorescent probe exhibits high selectivity over other common metal ions except for Cu(II).
Co-reporter:Huan Chen, Xiang-Jun Liu, Ya-Li Liu, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu
Biosensors and Bioelectronics 2009 Volume 24(Issue 7) pp:1955-1961
Publication Date(Web):15 March 2009
DOI:10.1016/j.bios.2008.09.029
MutS protein is an important part of the DNA repair system which can specifically recognize and bind all possible single-base mismatches as well as 1–4 base insertion or deletion loops with varying affinities independent of other proteins or cofactors. In this paper, a new approach for electrochemical gene mutation detection based on the utilization of MutS protein for the mutation recognition and spontaneously intercalated methylene blue (MB) markers for electrochemical signal generation is described. This method involves the immobilization of MutS protein onto the gold electrode, the hybridization of target DNA to form homoduplex or heteroduplex DNA, the application of MutS protein for the mutation recognition, and finally the intercalation of MB. The background is very low because MutS protein binds DNA containing mispaired and unpaired bases but does not bind equally well to DNA without mismatches or single-stranded DNA. The proposed approach has been successfully implemented for the identification of single-base mutation in −28 site of the β-thalassemia gene with a detection limit of 5.6 × 10−13 M, demonstrating that this method provides a highly specific and cost-efficient approach for point mutation detection.
Co-reporter:Chen-Bo Cai;Qing-Juan Han;Li-Juan Tang;Lu Xu;Jian-Hui Jiang;Hai-Long Wu
Adsorption 2009 Volume 15( Issue 1) pp:23-29
Publication Date(Web):2009 February
DOI:10.1007/s10450-008-9146-5
Through non-invasive monitoring the uptake of aniline vapor by active alumina in a differential adsorption bed (DAB) with near-infrared diffuse reflectance spectroscopy (NIR-DRS), we have studied several features of the adsorption, including isotherm, kinetics and the chemical state of aniline molecules in aniline-alumina system. What is perhaps more important, since the information above is obtained synchronously, the proposed methodology could provide information about the type of adsorption (chemical or physical adsorption), the change of chemical state of aniline in the system during the adsorption process, whether the chemical adsorption and physical adsorption took place simultaneously, the rate of the chemical and physical adsorption, and so on.
Co-reporter:Lu Xu, Yan-Ping Zhou, Li-Juan Tang, Hai-Long Wu, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2008 Volume 616(Issue 2) pp:138-143
Publication Date(Web):2 June 2008
DOI:10.1016/j.aca.2008.04.031
Preprocessing of raw near-infrared (NIR) spectral data is indispensable in multivariate calibration when the measured spectra are subject to significant noises, baselines and other undesirable factors. However, due to the lack of sufficient prior information and an incomplete knowledge of the raw data, NIR spectra preprocessing in multivariate calibration is still trial and error. How to select a proper method depends largely on both the nature of the data and the expertise and experience of the practitioners. This might limit the applications of multivariate calibration in many fields, where researchers are not very familiar with the characteristics of many preprocessing methods unique in chemometrics and have difficulties to select the most suitable methods. Another problem is many preprocessing methods, when used alone, might degrade the data in certain aspects or lose some useful information while improving certain qualities of the data. In order to tackle these problems, this paper proposes a new concept of data preprocessing, ensemble preprocessing method, where partial least squares (PLSs) models built on differently preprocessed data are combined by Monte Carlo cross validation (MCCV) stacked regression. Little or no prior information of the data and expertise are required. Moreover, fusion of complementary information obtained by different preprocessing methods often leads to a more stable and accurate calibration model. The investigation of two real data sets has demonstrated the advantages of the proposed method.
Co-reporter:Chun-Yan Li, Xiao-Bing Zhang, Yan-Yan Dong, Qiu-Juan Ma, Zhi-Xiang Han, Yan Zhao, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2008 Volume 616(Issue 2) pp:214-221
Publication Date(Web):2 June 2008
DOI:10.1016/j.aca.2008.04.024
A porphyrin derivative (1), containing two 2-(oxymethyl)pyridine units has been designed and synthesized as chemosensor for recognition of metal ions. Unlike many common porphyrin derivatives that show response to different heavy metal ions, compound 1 exhibits unexpected ratiometric fluorescence response to Zn2+ with high selectivity. The response of the novel chemosensor to zinc was based on the porphyrin metallation with cooperating effect of 2-(oxymethyl)pyridine units. The change of fluorescence of 1 was attributed to the formation of an inclusion complex between porphyrin ring and Zn2+ by 1:1 complex ratio (K = 1.04 × 105), which has been utilized as the basis of the fabrication of the Zn2+-sensitive fluorescent chemosensor. The analytical performance characteristics of the proposed Zn2+-sensitive chemosensor were investigated. The sensor can be applied to the quantification of Zn2+ with a linear range covering from 3.2 × 10−7 to 1.8 × 10−4 M and a detection limit of 5.5 × 10−8 M. The experiment results show that the response behavior of 1 to Zn2+ is pH-independent in medium condition (pH 4.0–8.0) and show excellent selectivity for Zn2+ over transition metal cations.
Co-reporter:Lu Xu, Li-Juan Tang, Chen-Bo Cai, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu, Jian-Hui Jiang
Analytica Chimica Acta 2008 Volume 613(Issue 2) pp:121-134
Publication Date(Web):21 April 2008
DOI:10.1016/j.aca.2008.02.061
Most traditional chromatographic separation criteria or response functions are defined on chromatograms recorded by single-channel detectors, e.g. a spectrometer measuring the absorbance at a single wavelength or a thermal conductivity detector. When the peaks are seriously overlapped, usually there is a lack of the information concerning the total number of chemical components, overlap degree of the peaks and peak purity. Such information characterizes some crucial aspects of separation process and lack of it will lead to an inaccurate and misleading evaluation of separation quality as well as some computational ambiguity for many traditional response functions. In contrast, hyphenated chromatography–(multi-channel) spectroscopy instruments together with chemometric methods will largely increase the information content available in chromatographic detection. Such information, if properly used, can cast a new light on evaluation of chromatographic separation quality. The main objective of this article is to review chemometric methods devoted to estimation of the number of chemical components, determination of elution sequence and assessment of peak purity. Some newly defined response functions or separation criteria based on extracted information by chemometric methods are also introduced. The methods reviewed are limited to those for treating two-way data obtained by hyphenation of high-performance liquid chromatography with multi-channel detectors. We prefer to provide a comprehensive view of such methods rather than present a full list of all the methods developed. Further details of some important methods are touched upon in favor of employment and understanding of them by researchers not very familiar with chemometrics.
Co-reporter:Chen-Bo Cai, Qing-Juan Han, Li-Juan Tang, Yan Zhang and Ru-Qin Yu
Industrial & Engineering Chemistry Research 2008 Volume 47(Issue 18) pp:6835
Publication Date(Web):August 16, 2008
DOI:10.1021/ie800003z
In this paper, we have studied the uptake of orthoxylene/isoamyl alcohol on silica gel as an example to demonstrate a novel methodology for studying multicomponent gas adsorption on solid adsorbent. In the method, the solid adsorbent was filled into a differential adsorption bed, and the bed was inline monitored with near-infrared diffuse reflectance spectroscopy continuously when the adsorption process was taking place. The spectral data recorded during the process were treated with algorithm of locally weighted regression, which constructed a series of partial least-squares models to more accurately predict concentrations of each adsorbate on the adsorbent. These efforts made the method feasible to obtain more thermodynamic and kinetic information about the adsorption process in a more convenient, rapid, economical, as well as straightforward way. With the method, we obtained the isothermal lines of the multicomponent system at 293.15 K, and the instantaneous adsorption rate of each component during the whole adsorption process.
Co-reporter:Xun Mao, Jianhui Jiang, Xiangmin Xu, Xia Chu, Yan Luo, Guoli Shen, Ruqin Yu
Biosensors and Bioelectronics 2008 Volume 23(Issue 10) pp:1555-1561
Publication Date(Web):15 May 2008
DOI:10.1016/j.bios.2008.01.019
We described a novel electrochemical DNA biosensor based on molecular beacon (MB) probe and enzymatic amplification protocol. The MB modified with a thiol at its 5′ end and a biotin at its 3′ end was immobilized on the gold electrode through mixed self-assembly process. Hybridization events between MB and target DNA cause the conformational change of the MB, triggering the attached biotin group on the electrode surface. Following the specific interaction between the conformation-triggered biotin and streptavidin-horseradish peroxidase (HRP), subsequent quantification of DNA was realized by electrochemical detection of enzymatic product in the presence of substrate. The detection limit is obtained as low as 0.1 nM. The presented DNA biosensor has good selectivity, being able to differentiate between a complementary target DNA sequence and one containing G–G single-base mismatches.
Co-reporter:Hong-Yuan Luo, Xiao-Bing Zhang, Chun-Lian He, Guo-Li Shen, Ru-Qin Yu
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 2008 Volume 70(Issue 2) pp:337-342
Publication Date(Web):July 2008
DOI:10.1016/j.saa.2007.09.012
A new fluorescent chemosensor for sensing Co(II) using di(2-picolyl)amino (DPA) as a recognition group and quinazoline as a reporting group has been synthesized and characterized. The quinazoline derivative contains an intramolecular hydrogen bond, which would undergo excited-state intramolecular proton transfer (ESIPT) at illumination. The fluorescence quenching is attributed to cation-induced inhibition of ESIPT, which constitutes the basis for the determination of Co(II) with the prepared chemosensor. The fluorophore forms 1:1 cobalt(II) complex with the logarithm of apparent dissociation constant log Ka = 6.8. The analytical performance characteristics of the proposed Co(II)-sensitive sensor were investigated. The chemosensor exhibits a linear response toward Co(II) in the concentration range 3.2 × 10−8 to 1.4 × 10−6 M, with a working pH range from 7.0 to 9.5 and high selectivity.
Co-reporter:Xiangjiang Liu, Shuangyan Huan, Yali Bu, Guoli Shen, Ruqin Yu
Talanta 2008 Volume 75(Issue 3) pp:797-803
Publication Date(Web):15 May 2008
DOI:10.1016/j.talanta.2007.12.017
A novel immunoassay based on surface-enhanced Raman scattering (SERS) has been developed. The method exploits the SERS-derived signal from reporter molecules (crystal violet, CV) encapsulated in antibody-modified liposome particles. The antigen is firstly captured by the primary antibody immobilized in microwell plates and then sandwiched by secondary antibody-modified liposome. The CV molecules are released from the liposome and transferred to specially designed substrate of gold nanosphere arrays with sub-10-nm gaps. The concentration of the antigen is indirectly read out by the SERS intensity of the CVs. The substrate used could substantially improve the sensitivity and reproducibility of SERS measurement. The SERS intensity responses are linearly correlated to logarithm of antigen concentration in the range of 1.0 × 10−8 to 1.0 × 10−4 g mL−1 with a detection limit of 8 ng mL−1. To our knowledge, this is the first report describing liposome-mediated enhancement of the sensitivity in immunoassay based on surface-enhanced Raman scattering. Experimental results show that the proposed method illustrates a potential prospect of applications in immunoassay.
Co-reporter:Yue Zheng, Huan Chen, Xue-Ping Liu, Jian-Hui Jiang, Yan Luo, Guo-Li Shen, Ru-Qin Yu
Talanta 2008 Volume 77(Issue 2) pp:809-814
Publication Date(Web):15 December 2008
DOI:10.1016/j.talanta.2008.07.038
A highly sensitive chemiluminescence immunosensor for the detection of prostate-specific antigen (PSA) was developed based on a novel amplification procedure with the application of enzyme encapsulated liposome. Horseradish peroxidase (HRP) encapsulated and antibody-modified liposome acts as the carrier of a large number of markers and specific recognition label for the amplified detection of PSA. In the detection of PSA, the analyte was first bound to the specific capture antibody immobilized on the microwell plates, and then sandwiched by the antibody-modified liposomes encapsulating HRP. The encapsulated markers, HRP molecules were released by the lysis of the specifically bound liposomes in the microwell with Triton X-100 solution. Then, the analyte PSA could be determined via the chemiluminescence signal of HRP-catalyzed luminol/peroxide/enhancer system. The “sandwich-type” immunoassay provides the amplification route for the PSA detection in ultratrace levels. The CL emission intensity exhibits dynamic correlation to PSA concentration in the range from 0.74 pg/ml to 0.74 μg/ml with readily achievable detection limit of 0.7 pg/ml.
Co-reporter:Chen-Bo Cai, Qing-Juan Han, Li-Juan Tang, Jin-Fang Nie, Li-Qun Ouyang, Ru-Qin Yu
Talanta 2008 Volume 77(Issue 2) pp:822-826
Publication Date(Web):15 December 2008
DOI:10.1016/j.talanta.2008.07.037
Through randomly arranging samples of a calibration set, treating their NIR spectra with orthogonal discrete wavelet transform, and selecting suitable variables in terms of correlation coefficient test (r-test), it is possible to extract features of each component in a multi-component system respectively and partial least squares (PLS) models based on these features are capable of predicting the concentration of every component. What is perhaps more important, with the proposed strategy, the predictive ability of the model is at least not impaired while the size of the calibration set can be obviously reduced. Therefore, it provides a more economical, rapid, as well as convenient approach of NIR quantitative analysis for multi-component system. In addition, all important factors and parameters related to the proposed strategy are discussed in detail.
Co-reporter:Yan Luo, Xun Mao, Zhao-Feng Peng, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu
Talanta 2008 Volume 74(Issue 5) pp:1642-1648
Publication Date(Web):15 February 2008
DOI:10.1016/j.talanta.2007.10.026
A novel, sensitive electrochemical immunoassay in a homogeneously dispersed medium is described herein based on the unique features of agarose beads and the special amplified properties of biometallization. The immunochemical recognition event between human immunoglobulin G (IgG) and goat anti-human IgG antibody is chosen as the model system to demonstrate the proposed immunoassay approach. Avidin-agarose beads rapidly react with the biotinylated goat anti-human IgG antibody to form agarose beads-goat anti-human IgG conjugate (agarose bead-Ab). Agarose bead-Ab, alkaline phosphatase conjugated goat anti-human IgG antibody (ALP-Ab) and the human IgG analyte are mixed to form sandwich-type immunocomplex followed by the addition of the enzymatic silver deposition solution to deposit silver onto the surface of proteins and agarose beads. The silver deposited are dissolved and quantified by anodic stripping voltammetry. The influence of relevant experimental variables was examined and optimized. The logarithm of the anodic stripping peak current depended linearly on the logarithm of the concentration of human IgG in the range from 1 to 1000 ng/ml. A detection limit as low as 0.5 ng/ml human IgG was attained by 3σ-rule. The R.S.D. of the approach is 9.65% for eight times determination of 10 ng/ml human IgG under same conditions. Optical microscope and TEM graphs were also utilized to characterize agarose beads and silver nanoparticles formed.
Co-reporter:Ming-Hui Yang, Feng-Li Qu, Ya-Shuang Lu, Guo-Li Shen, Ru-Qin Yu
Talanta 2008 Volume 74(Issue 4) pp:831-835
Publication Date(Web):15 January 2008
DOI:10.1016/j.talanta.2007.07.013
Platinum nanoparticles (PtNPs) attached to glass slide surface was successfully prepared by using a simple in situ chemical reduction method. In this method, a ∼10 nm gold layer was first sputtered uniformly onto the glass slide surface, PtNPs could be grown directly on the gold layer by immersing the glass slide into the grown solution containing H2PtCl4 and ascorbic acid. The gold layer sputtered uniformly serves as “seed” for the following growth of PtNPs and high dense of PtNP modified film can be prepared. Control experiment without the gold layer found no obvious formation of PtNPs indicating the importance of the “seed”. The electrocatalytic effect of the PtNP film was investigated with the detection of hydrogen peroxide and for the fabrication of biosensors. Glucose oxidase was selected and directly electrodeposited onto the PtNPs modified surface. The resulting biosensor has a fast response time (<10 s) with wide linear range (5 × 10−6 to 2 × 10−2). The fabrication method is simple, convenient and can be used for the mass fabrication of biosensors. The present preparation method of PtNPs modified film could be used for the preparation of other metal nanoparticle and find electrochemical applications as well as for optical uses.
Co-reporter:Yan-Ping Zhou, Chen-Bo Cai, Shi Huan, Jian-Hui Jiang, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2007 Volume 593(Issue 1) pp:68-74
Publication Date(Web):12 June 2007
DOI:10.1016/j.aca.2007.04.031
In the current study, robust boosting partial least squares (RBPLS) regression has been proposed to model the activities of a series of 4H-1,2,4-triazoles as angiotensin II antagonists. RBPLS works by sequentially employing PLS method to the robustly reweighted versions of the training compounds, and then combing these resulting predictors through weighted median. In PLS modeling, an F-statistic has been introduced to automatically determine the number of PLS components. The results obtained by RBPLS have been compared to those by boosting partial least squares (BPLS) repression and partial least squares (PLS) regression, showing the good performance of RBPLS in improving the QSAR modeling. In addition, the interaction of angiotensin II antagonists is a complex one, including topological, spatial, thermodynamic and electronic effects.
Co-reporter:Yun-Long Zeng, Yu-Fang Huang, Jian-Hui Jiang, Xiao-Bing Zhang, Chun-Ran Tang, Guo-Li Shen, Ru-Qin Yu
Electrochemistry Communications 2007 Volume 9(Issue 1) pp:185-190
Publication Date(Web):January 2007
DOI:10.1016/j.elecom.2006.08.052
By grafting with poly(amidoamine) (PAMAM) dendrimer, novel carbon nanotube (CNT) nano-composites have been successfully prepared. The novel functionalized matrix with plenty amino groups circumvents the troublesome solubility problem of CNTs in solvents, especially in water, greatly expanding the scope of the application of carbon nanotubes. The GOx and HRP immobilized CNT-PAMAM based on the functional CNTs was synthesized. The bi-enzymatic CNT-PAMAM nano-composites are highly dispersible in water and show very promising applications in the fabrication of mediator-free bi-enzymatic biosensors for sensitive detection of glucose. The cooperation of nano-composite between CNT and high dense GOx and HRP results in very high sensitivity to glucose with a current response of 2200 nA mM−1 and fast response (∼1 s). The modified electrode exhibits a wide linear response range for glucose from 4.0 μM to 1.2 mM (R = 0.9971, N = 15), with a detection limit of 2.5 μM. The negative electrode potential of −0.34 V is favorable for glucose detection in real samples without interference caused by other biomolecules.
Co-reporter:Yun-Long Zeng, Hao-Wen Huang, Jian-Hui Jiang, Mei-Na Tian, Chun-Xiang Li, Chun-Ran Tang, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2007 Volume 604(Issue 2) pp:170-176
Publication Date(Web):5 December 2007
DOI:10.1016/j.aca.2007.09.055
We report the synthesis of a novel looped enzyme–polyamidoamine nanocomposite with high enzyme loading density and long-term retention of bioactivity. The horseradish peroxidase (HRP) is first immobilized on fourth-grade (G4) poly(amidoamine) (PAMAM) dendrimer to form relatively a small enzyme–PAMAM composite, which is allowed to grow up into a larger one. The looped horseradish peroxidase-polyamidoamine (HRP-PAMAM) nanohybrid was characterized by TEM. The material obtained shows promising features as applied to the fabrication of high sensitive and long lifetime biosensors. In the presence of the hydroquinone mediator in the solution, the immobilized HRP exhibited excellent electro-catalytical response to H2O2. Under the optimal conditions, the resulting biosensor showed a linear response to H2O2 over a concentration range from 3.1 × 10−6 to 2.0 × 10−3 mol L−1 with a sensitivity of 0.36 A L mol−1 cm−2 and a detection limit of 8.0 × 10−7 mol L−1. The sensitivity of the sensor response maintained over 70% of the original over 10 weeks. The catalytic activity of the looped enzyme–PAMAM nanohybrid form of HRP enzyme was obviously stabilized. As an extension, bienzyme sensor modified with glucose oxidase and HRP enzymatic PAMAM nanocomposites was constructed. The sensor exhibited improved performance and can be applied to the detection of glucose in real samples.
Co-reporter:Xun Mao, Jianhui Jiang, Yan Luo, Guoli Shen, Ruqin Yu
Talanta 2007 Volume 73(Issue 3) pp:420-424
Publication Date(Web):30 September 2007
DOI:10.1016/j.talanta.2007.04.004
We demonstrate herein a novel electrochemical protocol for quantification of human IgG based on the precipitation of copper on gold nanoparticle tags and a subsequent electrochemical stripping detection of the dissolved copper. The immunoassay was conducted by following the typical procedure for sandwich-type immunoreaction. Goat anti-human IgG was immobilized on the wells of microtiter plates. The human IgG analyte was first captured by the primary antibody and then sandwiched by secondary antibody labeled with gold nanoparticles. The copper enhancer solution was then added to deposite copper on the gold nanoparticle tags. After dissolved with HNO3, the released copper ions were then quantified by ASV. The detection limit is 0.5 ng/mL by 3σ-rule. In order to investigate the feasibility of the newly developed technique to be applied for clinical analysis, several standard human IgG serum specimens were also examined by the method. To our knowledge, the copper enhancing procedure is the first time to be developed for immunoassay. The new strategy of using copper-enhanced gold nanoparticle tags for electrochemical stripping detection holds great promise for immunoassay and DNA detection.
Co-reporter:Zhao-Peng Chen, Zhao-Feng Peng, Peng Zhang, Xue-Fang Jin, Jian-Hui Jiang, Xiao-Bing Zhang, Guo-Li Shen, Ru-Qin Yu
Talanta 2007 Volume 72(Issue 5) pp:1800-1804
Publication Date(Web):31 July 2007
DOI:10.1016/j.talanta.2007.02.020
A sensitive immunosensor using colloidal gold as electrochemical label is described. In this method, the capture protein was first immobilized on a carbon paste electrode surface through passive adsorption to bind quantitatively with corresponding antigen and colloidal gold labeled antibody to perform a sandwich assay. To detect the amount of the colloidal gold captured on the electrode surface, the colloid was first oxidized electrochemically to produce AuCl4− ions which were adsorbed strongly on the electrode surface. Adsorptive voltammetry was then employed for the determination of the adsorbed AuCl4− ions. A linear relationship between reduction wave peak current and the antigen concentration (human IgG) from 10 to 500 ng/ml is obtained with a detection limit of 4.0 ng/ml.
Co-reporter:Yi Liang, Ji-Lai Gong, Yong Huang, Yue Zheng, Jian-Hui Jiang, Guo-Li Shen, Ru-Qin Yu
Talanta 2007 Volume 72(Issue 2) pp:443-449
Publication Date(Web):30 April 2007
DOI:10.1016/j.talanta.2006.11.002
A novel, highly selective DNA hybridization assay has been developed based on surface-enhanced Raman scattering (SERS) for DNA sequences related to HIV. This strategy employs the Ag/SiO2 core-shell nanoparticle-based Raman tags and the amino group modified silica-coated magnetic nanoparticles as immobilization matrix and separation tool. The hybridization reaction was performed between Raman tags functionalized with 3′-amino-labeled oligonucleotides as detection probes and the amino group modified silica-coated magnetic nanoparticles functionalized with 5′-amino-labeled oligonucleotides as capture probes. The Raman spectra of Raman tags can be used to monitor the presence of target oligonucleotides. The utilization of silica-coated magnetic nanoparticles not only avoided time-consuming washing, but also amplified the signal of hybridization assay. Additionally, the results of control experiments show that no or very low signal would be obtained if the hybridization assay is conducted in the presence of DNA sequences other than complementary oligonucleotides related to HIV gene such as non-complementary oligonucleotides, four bases mismatch oligonucleotides, two bases mismatch oligonucleotides and even single base mismatch oligonucleotides. It was demonstrated that the method developed in this work has high selectivity and sensitivity for DNA detection related to HIV gene.
Co-reporter:Hong-Yuan Luo, Jian-Hui Jiang, Xiao-Bing Zhang, Chun-Yan Li, Guo-Li Shen, Ru-Qin Yu
Talanta 2007 Volume 72(Issue 2) pp:575-581
Publication Date(Web):30 April 2007
DOI:10.1016/j.talanta.2006.11.028
The design and synthesis of a porphyrin-appended terpyridine, 5-(4-([2,2′:6′,2″]-terpyridin-4-yl-carboxyamidyl)phenyl)-10,15,20-triphenylporphyrin (H2TPPTPy) and its application as potential fluoroionophore for recognition of metal ions are reported. For preparation of the fluoroionophore, a novel simple strategy with improved total yield has been applied for the synthesis of 2,2′:6′,2″-terpyridine-4′-carboxylic acid as a ligand. H2TPPTPy shows chelation-enhanced fluorescence effect with cadmium ion via the interruption of photoinduced electron transfer (PET) process, which has been utilized as the basis of the fabrication of the Cd(II)-sensitive fluorescent chemosensor. The analytical performance characteristics of the proposed Cd(II)-sensitive chemosensor were investigated. It shows a linear response toward Cd(II) in the concentration range of 3.2 × 10−6 to 3.2 × 10−4 M with a limit of detection of 1.2 × 10−6 M. The chemosensor shows good selectivity for Cd(II) over a large number of cations, such as alkali, alkali earth and transitional metal ions except Cu(II) and Zn(II). The sensor has been used for determination of Cd(II) in water samples with satisfactory recoveries.
Co-reporter:Zhao-Peng Chen, Jian-Hui Jiang, Xiao-Bing Zhang, Guo-Li Shen, Ru-Qin Yu
Talanta 2007 Volume 71(Issue 5) pp:2029-2033
Publication Date(Web):30 March 2007
DOI:10.1016/j.talanta.2006.09.011
An electrochemical immunoassay technique has been developed based on the sensitive detection of the enzyme-generated product with a bi-electrode signal transduction system. The system uses two separate electrodes, an immunoelectrode and a detection electrode to form a galvanic cell to implement the redox reactions on two different electrodes, that is the enzyme-generated reductant in the anode region is electrochemically oxidized by an oxidant (silver ions) in the cathode apartment. Based on a sandwich procedure, after immunoelectrode with antibody immobilized on its surface bound with the corresponding antigen and alkaline phosphatase conjugated antibody successively, the immunoelectrode was placed in enzyme reaction solution and wired to the detection electrode which was immerged into a silver deposition solution. These two solutions are connected with a salt bridge. Thus a bi-electrode signal transduction system device is constructed in which the immunoelectrode acts as anode and the detection electrode serves as cathode. The enzyme bound on the anode surface initiates the hydrolysis of ascorbic acid 2-phosphate to produce ascorbic acid in the anode region. The ascorbic acid produced in the anodic apartment is electrochemically oxidized by silver ions coupled with the deposition of silver metal on the cathode. Via a period of 30 min deposition, silver will deposited on the detection electrode in an amount corresponding to the quantity of ascorbic acid produced, leading to a great enhancement in the electrochemical stripping signal due to the accumulation of metallic silver by enzyme-generated product. Compared with the method using chemical deposition of silver, the electrochemical deposition of silver on a separate detection electrode apartment avoids the possible influence of silver deposition on the enzyme activity.
Co-reporter:Lu Xu, Jian-Hui Jiang, Wei-Qi Lin, Yan-Ping Zhou, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu
Talanta 2007 Volume 71(Issue 2) pp:561-566
Publication Date(Web):15 February 2007
DOI:10.1016/j.talanta.2006.04.039
In ordinary multivariate calibration methods, when the calibration set is determined to build the model describing the relationship between the dependent variables and the predictor variables, each sample in the calibration set makes the same contribution to the model, where the difference of representativeness between the samples is ignored. In this paper, by introducing the concept of weighted sampling into partial least squares (PLS), a new multivariate regression method, optimized sample-weighted PLS (OSWPLS) is proposed. OSWPLS differs from PLS in that it builds a new calibration set, where each sample in the original calibration set is weighted differently to account for its representativeness to improve the prediction ability of the algorithm. A recently suggested global optimization algorithm, particle swarm optimization (PSO) algorithm is used to search for the best sample weights to optimize the calibration of the original training set and the prediction of an independent validation set. The proposed method is applied to two real data sets and compared with the results of PLS, the most significant improvement is obtained for the meat data, where the root mean squared error of prediction (RMSEP) is reduced from 3.03 to 2.35. For the fuel data, OSWPLS can also perform slightly better or no worse than PLS for the prediction of the four analytes. The stability and efficiency of OSWPLS is also studied, the results demonstrate that the proposed method can obtain desirable results within moderate PSO cycles.
Co-reporter:Zhao-Peng Chen, Zhao-Feng Peng, Yan Luo, Bo Qu, Jian-Hui Jiang, Xiao-Bing Zhang, Guo-Li Shen, Ru-Qin Yu
Biosensors and Bioelectronics 2007 Volume 23(Issue 4) pp:485-491
Publication Date(Web):30 November 2007
DOI:10.1016/j.bios.2007.06.005
A successively signal-amplified electrochemical immunoassay has been reported on the basis of the biocatalytic deposition of silver nanoparticles with their subsequent enlargement by nanoparticle-promoted catalytic precipitation of silver from the silver-enhancer solution. The immunoassay was carried out based on a heterogeneous sandwich procedure using polystyrene microwells to immobilize antibody. After all the processes comprising the formation of immunocomplex, biocatalytic deposition of silver nanoparticles and following silver enhancement were completed, the silver on polystyrene microwells was dissolved and quantified by anodic stripping voltammetry (ASV). The effect of relevant experimental conditions, including the concentration of ascorbic acid 2-phosphate (AA-p) substrate and Ag(I) ions, the biocatalytic deposition time, and of crucial importance, the silver enhancement time, were investigated and optimized. The anodic stripping peak current was proportional to the concentration of human IgG in a dynamic range of 0.1–10 ng ml−1 with a detection limit of 0.03 ng ml−1. Scanning electron microscope (SEM) was applied to characterize the silver nanoparticles before and after silver enhancement on the surface of polystyrene microplates. By coupling the highly catalytic effect of enzyme and nanoparticles to successively amplify the analytical signal, the sensitivity of immunoassay was enhanced so dramatically that this approach would be a promising strategy to achieve a lower detection limit for bioassays.
Co-reporter:Yan-Ping Zhou, Jian-Hui Jiang, Wei-Qi Lin, Lu Xu, Hai-Long Wu, Guo-Li Shen, Ru-Qin Yu
Talanta 2007 Volume 71(Issue 2) pp:848-853
Publication Date(Web):15 February 2007
DOI:10.1016/j.talanta.2006.05.058
Co-reporter:Xiao-Bing Zhang, Guo Cheng, Wei-Jun Zhang, Guo-Li Shen, Ru-Qin Yu
Talanta 2007 Volume 71(Issue 1) pp:171-177
Publication Date(Web):15 January 2007
DOI:10.1016/j.talanta.2006.03.036
In this paper, 2-(2′-hydroxy-phenyl)-4(3H)-quinazolinone (HPQ), a typical compound that exhibits excited state intramolecular proton transfer (ESIPT) reaction and possesses good photophysical properties, is synthesized and used as fluoroionophore for Fe3+ sensitive optochemical sensor. The decrease of fluorescence intensity of HPQ membrane upon the addition of Fe3+ was attributed to the blocking of ESIPT reactions of HPQ and quenching its fluorescence. The effect of the composition of the sensing membrane was studied, and experimental conditions were optimized. The sensor shows a linear response toward Fe3+ in the concentration range of 7.1 × 10−7 M to 1.4 × 10−4 M with a limit of detection of 8.0 × 10−8 M, and a working pH range from 2.5 to 4.5. It shows excellent selectivity for Fe3+ over a large number of cations such as alkali, alkaline earth and transitional metal ions. The proposed sensor is applied to the determination of the content of iron ions in pharmaceutical preparations samples with satisfactory results.
Co-reporter:Xiao-Bing Zhang, Jing Peng, Chun-Lian He, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2006 Volume 567(Issue 2) pp:189-195
Publication Date(Web):17 May 2006
DOI:10.1016/j.aca.2006.03.025
This paper describes a copper selective optical chemical sensor based on static quenching of the fluorescence of 2-(2′-hydroxyphenyl)benzoxazole entrapped in a poly(vinyl chloride) (PVC) membrane. The effect of the composition of the sensing membrane was studied, and experimental conditions were optimized. The sensors exhibit stable response over the concentration range from 4.0 × 10−8 M to 5.0 × 10−5 M Cu2+ at pH 4.0–6.5, and a high selectivity. The response time for Cu2+ with concentration ≤5 × 10−6 M is less than 7 min. The optode can be regenerated using 0.1 M HCl and acetate buffer solution. The sensor has been used for direct measurement of copper content in river water samples with a relative error less than 4% with reference to that obtained by atomic absorption spectrometry.
Co-reporter:Xun Mao, Jianhui Jiang, Jiwei Chen, Yong Huang, Guoli Shen, Ruqin Yu
Analytica Chimica Acta 2006 Volume 557(1–2) pp:159-163
Publication Date(Web):31 January 2006
DOI:10.1016/j.aca.2005.09.078
A new method based on cyclic accumulation of gold nanoparticles has been proposed for determinating human immunoglobulin G (IgG) by anodic stripping voltammetry. The dissociation reaction between dethiobiotin and avidin in the presence of biotin provides efficient means for the cyclic accumulation of gold nanoparticles used for the final analytical quantification. The immunoassay was conducted by following the typical procedure for sandwich-type immunoreaction. Goat anti-human IgG is immobilized on the wells of microtiter plates. The human IgG analyte is first captured by the primary antibody and then sandwiched by secondary antibody labeled with dethiobiotin. Avidin-Au solution was introduced to react with dethiobiotinylated antibody followed by adding of bioitin solution to wash it down. The dissociation of avidin-Au from dethiobiotinylated antibody was caused by displacing function of biotin to dethiobiotin. Making use of the ability of dethiobiotinylated antibody keeping its activity after the association/dissociation reaction, the alternatively treatment with avidin-Au and biotin solutions could realize cyclic accumulation of gold nanoparticles for ASV quantification. The anodic peak current increases gradually with the increasing accumulation cycles. Five cycles of accumulation are sufficient for the assay. The experiment conducted with a blank solution without addition of the analyte showed an extremely low background even with the number of accumulation cycles reached 10. The low background of the proposed method is a distinguished advantage providing a possibility for determination of at least 0.1 ng/ml human IgG. The RSD of the method is 9.57% for eight times determination of 1 ng/ml human IgG under the same conditions.
Co-reporter:Ji-Lai Gong, Jian-Hui Jiang, Hai-Feng Yang, Guo-Li Shen, Ru-Qin Yu, Yukihiro Ozaki
Analytica Chimica Acta 2006 Volume 564(Issue 2) pp:151-157
Publication Date(Web):6 April 2006
DOI:10.1016/j.aca.2006.01.055
An approach to prepare novel glass-coated gold core-shell nanoparticles embedded with Raman active molecules has been developed. This strategy eliminates the need of a coupling agent and enables efficient embedding of most of commercially available Raman active dyes, even those with weak affinity to a gold surface. Our experiments have demonstrated the hypothesis that the glass encapsulation chemistry is based on the reaction between silanol groups hydrolyzed by TEOS and citrate anion groups adsorbed onto the gold nanoparticles leading to the formation of a silica layer through further reaction with silanol groups of other hydrolyzed TEOS. Furthermore, it has been demonstrated the potential of these novel nanoparticls as Raman tags in ultrasensitive immunoassays for human IgG antigen with a detection limit of 4.9 ng/ml.
Co-reporter:Zhi-Guo Wang, Jian-Hui Jiang, Yi-Zeng Liang, Hai-Long Wu, Ru-Qin Yu
Chemometrics and Intelligent Laboratory Systems 2006 Volume 82(1–2) pp:154-164
Publication Date(Web):26 May 2006
DOI:10.1016/j.chemolab.2005.08.010
A method for self-modeling curve resolution (SMCR) of two-way data is proposed. It is demonstrated that with an arbitrary p-normalization (p > 1), the two-way data points are located on a certain polyhedral hyper-“spherical” surface with the vertices constituted by the pure variables. This elucidates the geometry of an old discovery that two-way data points are bracketed by the pure variables. Thus a property of the polyhedral hyper-“sphere” is given, which states that the vertex vectors maximize a certain quadratic form over all points on the hyper-“spherical” surface. A procedure for determining pure variables in two-way data is then developed. Finally, an optimization algorithm to refine the resolution is suggested. With a good starting estimate that is as close as possible to the true pure profiles, the proposed method is expected to yield improved resolution compared to traditional resolution techniques. The proposed method is evaluated with two simulated data sets and two real chemical data sets from hyphenated chromatography–diode array detection (HPLC–DAD) of polyaromatic hydrocarbon in air particle samples. The results show that the proposed method gives satisfactory resolution for the four data sets.
Co-reporter:Yan-Ping Zhou;Hai-Long Wu;Jian-Hui Jiang;Guo-Li Shen;Yukihiro Ozaki
Journal of Chemometrics 2006 Volume 20(Issue 1‐2) pp:13-21
Publication Date(Web):12 DEC 2006
DOI:10.1002/cem.974
A novel near infrared (NIR) spectroscopic measurement technique, dry film method, has been proposed for the determination of glucose in plasma. Rare earth element ytterbium (Yb) has been taken in the dry film method as the internal standard to compensate for the thickness variation of the dry films. This technique circumvents the interference from water absorption and requires only 50 µl of sample. Support vector regression (SVR) as a multivariate calibration method has been combined with boosting for the development of a boosting support vector regression (BSVR) method for the dry film measurement modeling. The introduction of boosting drastically enhances the performance of individual SVR model. The results show that the glucose in plasma can be determined over the 0.4–20 mmol/L concentration range with satisfactory accuracy using the dry film technique coupled with the BSVR method. Moreover, the performance of BSVR was compared favorably with that of the conventional SVR and PLS. Copyright © 2006 John Wiley & Sons, Ltd.
Co-reporter:Zhaoyang Wu, Liguo Chen, Guoli Shen, Ruqin Yu
Sensors and Actuators B: Chemical 2006 Volume 119(Issue 1) pp:295-301
Publication Date(Web):24 November 2006
DOI:10.1016/j.snb.2005.12.023
A novel platinum nanoparticle-modified carbon fiber ultramicroelectrode (Pt/CFUME) is proposed for the construction of a mediator-free amperometric ultramicroelectrode biosensor. The platinum nanoparticles electrodeposited on the ultramicroelectrodes greatly increase the surface areas with enhanced electron transfer characteristics between the electroactive centers of enzymes and the ultramicroelectrodes. By using horseradish peroxidase (HRP) as an enzyme model, we construct a mediator-free amperometric ultramicroelectrode HRP sensor for detecting H2O2. The resultant biosensor well displays the direct electrochemical behavior of HRP on the Pt/CFUME and the electrocatalytic response to the reduction of H2O2 without the aid of electron mediators. The steady-state response current is linearly related to the H2O2 concentration in the range of 0.64 μM–3.6 mM with a detection limit of 0.35 μM (S/N = 3) and a correlation coefficient of 0.9953.
Co-reporter:Li Lin, Wei-Qi Lin, Jian-Hui Jiang, Yan-Ping Zhou, Guo-Li Shen, Ru-Qin Yu
Analytica Chimica Acta 2005 Volume 552(1–2) pp:42-49
Publication Date(Web):3 November 2005
DOI:10.1016/j.aca.2005.07.033
In the present work, we employed piecewise hyper-sphere modeling by particle swarm optimization (PHMPSO) which splits the dataset into subsets with desired linearity in each model for QSAR studies of a series of 2-aryl(heteroaryl)-2,5-dihydropyrazolo[4,3-c]quinolin-3-(3H)-ones (PQs) for their affinity to benzodiazepine receptor (BzR). The results were compared to those obtained by MLR modeling in a single model with the whole data set as well as in submodels based on K-means clustering analysis. It has been clearly shown that electronic descriptors and spatial descriptors play the important roles in the compounds’ affinity to BzR. In addition, the molecular density, the Y component of the principal moment of inertia, the magnitude and the Y component of the dipole moment of the molecules can detrimentally affect PQ analogue BzR affinity, while the X component of the dipole moment of the molecules can favorably affect compounds’ affinity.
Co-reporter:Cheng-Gang Niu, Guan-Ming Zeng, Li-Xin Chen, Guo-Li Shen and Ru-Qin Yu
Analyst 2004 vol. 129(Issue 1) pp:20-24
Publication Date(Web):25 Nov 2003
DOI:10.1039/B309594K
In a search for new type pH sensing fluorophores, the possibility of using the proton “off–on” switch behaviour of naphthalimide derivatives for optical pH sensor preparation has been explored. A new compound, N-allyl-4-(4′-methyl-piperazinyl)-1,8-naphthalimide (AMPN), was synthesized. The enhancement of fluorescence of AMPN with the increase of hydrogen ion concentration is based on arresting photo-induced electron transfer to the naphthalimide fluorophore from aliphatic amine group after its protonation. The Stokes Shift of the proposed type of pH sensing fluorophore is significantly larger than that of the fluorescein counterparts. To avoid the leakage of the fluorophore, AMPN was photo-copolymerized with 2-hydroxyethyl methacrylate and acrylamide on the glass surface. The fluorescence intensity of membrane contacted with a pH 3.50 buffer is 4.7 times of that for pH 12.00 buffer solutions. The proposed pH sensor is not susceptible to ionic strength and shows good selectivity, repeatability and short response time. The membrane shows a good stability with a lifetime over two months. The sensor can be used for the determination of pH in the range of pH 4.5–9.0, without interference of most commonly co-existing inorganic ions and some organic species. The sensor has been applied to the analysis of urine samples.
Co-reporter:Zaisheng Wu, Hui Zhou, Songbai Zhang, Xiaobing Zhang, Guoli Shen and Ruqin Yu
Chemical Communications 2010 - vol. 46(Issue 13) pp:NaN2234-2234
Publication Date(Web):2010/01/18
DOI:10.1039/B919585H
A pendulum-type DNA nanoswitch, which can perform a reversible on/off molecular motion at an about 9.1-nm scale is developed as a proof-of-concept, and the sequence-specific recognition and quantification of target olignucleotides are demonstrated utilizing this screening scheme.
Co-reporter:Rong-Mei Kong, Xiao-Bing Zhang, Liang-Liang Zhang, Xiao-Yong Jin, Shuang-Yan Huan, Guo-Li Shen and Ru-Qin Yu
Chemical Communications 2009(Issue 37) pp:NaN5635-5635
Publication Date(Web):2009/08/05
DOI:10.1039/B911163H
A highly selective electrochemical biosensor for the ultrasensitive detection of Hg2+ in aqueous solution has been developed based on the strong and specific binding of Hg2+ by two DNAthymine bases (T–Hg2+–T) and the use of AuNP-functionalized reporter DNA to achieve signal amplification.