Bill Baker

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Organization: University of South Florida
Department: Department of Chemistry and Center for Molecular Diversity in Drug Design, Discovery and Delivery
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Co-reporter:Mackenzie D. Martin, Laurent Calcul, Courtney Smith, Umesh K. Jinwal, Sarah N. Fontaine, April Darling, Kent Seeley, Lukasz Wojtas, Malathi Narayan, Jason E. Gestwicki, Garry R. Smith, Allen B. Reitz, Bill J. Baker, and Chad A. Dickey
ACS Chemical Biology 2015 Volume 10(Issue 4) pp:1099
Publication Date(Web):January 14, 2015
DOI:10.1021/cb501013w
We previously discovered that one specific scalemic preparation of myricanol (1), a constituent of Myrica cerifera (bayberry/southern wax myrtle) root bark, could lower the levels of the microtubule-associated protein tau (MAPT). The significance is that tau accumulates in a number of neurodegenerative diseases, the most common being Alzheimer’s disease (AD). Herein, a new synthetic route to prepare myricanol using a suitable boronic acid pinacol ester intermediate is reported. An X-ray crystal structure of the isolated myricanol (1) was obtained and showed a co-crystal consisting of (+)-aR,11S-myricanol (2) and (−)-aS,11R-myricanol (3) coformers. Surprisingly, 3, obtained from chiral separation from 1, reduced tau levels in both cultured cells and ex vivo brain slices from a mouse model of tauopathy at reasonable mid-to-low micromolar potency, whereas 2 did not. SILAC proteomics and cell assays revealed that 3 promoted tau degradation through an autophagic mechanism, which was in contrast to that of other tau-lowering compounds previously identified by our group. During the course of structure–activity relationship (SAR) development, we prepared compound 13 by acid-catalyzed dehydration of 1. 13 had undergone an unexpected structural rearrangement through the isomyricanol substitution pattern (e.g., 16), as verified by X-ray structural analysis. Compound 13 displayed robust tau-lowering activity, and, importantly, its enantiomers reduced tau levels similarly. Therefore, the semisynthetic analogue 13 provides a foundation for further development as a tau-lowering agent without its SAR being based on chirality.
Co-reporter:Thushara Diyabalanage, Katrin B. Iken, James B. McClintock, Charles D. Amsler and Bill J. Baker
Journal of Natural Products 2010 Volume 73(Issue 3) pp:416-421
Publication Date(Web):February 1, 2010
DOI:10.1021/np900617m
The nudibranch Austrodoris kerguelenensis is distributed widely around the Antarctic coast and continental shelves. Earlier collections from McMurdo Sound and the Weddell Sea shelf have afforded a suite of diterpene glyceride esters, a compound class implicated as a chemical defense in nudibranchs. The present chemical investigation of A. kerguelenensis collected near Palmer Station on the Western Antarctic Peninsula has revealed additional examples, palmadorins A−C (1−3), as the first three members of a new series of clerodane diterpenes. In this paper we describe their isolation, structure elucidation, and stereochemical analysis using a combination of one- and two-dimensional NMR spectroscopy and wet chemical methods.
Co-reporter:Matthew D. Lebar, Bill J. Baker
Tetrahedron 2010 66(8) pp: 1557-1562
Publication Date(Web):
DOI:10.1016/j.tet.2009.12.007
Co-reporter:Wai S. Ma, Tina Mutka, Brian Vesley, Margaret O. Amsler, James B. McClintock, Charles D. Amsler, Jason A. Perman, Maya P. Singh, William M. Maiese, Michael J. Zaworotko, Dennis E. Kyle and Bill J. Baker
Journal of Natural Products 2009 Volume 72(Issue 10) pp:1842-1846
Publication Date(Web):October 1, 2009
DOI:10.1021/np900382x
Five new steroids, norselic acids A−E (1−5), were isolated from the sponge Crella sp. collected in Antarctica. The planar structures of the norselic acids were established by extensive NMR spectroscopy and mass spectrometry studies, and the configuration of norselic acid A (1) was elucidated by X-ray crystallography. Norselic acid A displays antibiotic activity against methicillin-resistant Staphylococcus aureus (MRSA), methicillin-sensitive S. aureus (MSSA), vancomycin-resistant Enterococcus faecium (VRE), and Candida albicans and reduces consumption of food pellets by sympatric mesograzers. Compounds 1−5 are also active against the Leishmania parasite at low micromolar levels.
Co-reporter:Matthew D. Lebar, Jaime L. Heimbegner and Bill J. Baker  
Natural Product Reports 2007 vol. 24(Issue 4) pp:774-797
Publication Date(Web):29 Mar 2007
DOI:10.1039/B516240H
Covering: up to the end of 2005
Co-reporter:Yoshinari Miyata, Thushara Diyabalanage, Charles D. Amsler, James B. McClintock, Frederick A. Valeriote and Bill J. Baker
Journal of Natural Products 2007 Volume 70(Issue 12) pp:1859-1864
Publication Date(Web):November 27, 2007
DOI:10.1021/np0702739
Five new ecdysteroids, hyousterones A−D (2−5) and abeohyousterone (6), have been isolated from the Antarctic tunicate Synoicum adareanum along with the known ecdysteroid diaulusterol B (1). Hyousterones B (3) and D (5) are unusual ecdysteroids in bearing the 14β-hydroxyl group, and abeohyousterone incorporates the 13(14→8) abeo steroid skeleton, reflecting a rearrangement of the steroid C/D ring system. Abeohyousterone has moderate cytotoxicity toward several cancer cell lines. Hyousterones bearing the 14α-hydroxy group (2 and 4) were weakly cytotoxic, while the 14β-hydroxy hyousterones (3 and 5) were devoid of cytotoxicity. The 14β-hydroxy function may be a thermodynamic pathway to the 13(14→8) abeo steroid skeleton. Hyousterones, abeohyousterone, and diaulusterol B are the first ecdysteroids reported from tunicates.
2-BUTANONE, 4-[4-(PHENYLMETHOXY)PHENYL]-
(2E,6E)-3,7,11-TRIMETHYL-2,6,10-DODECATRIEN-1-YL TRIHYDROGEN DIPHOSPHATE
Tricyclo[12.3.1.12,6]nonadeca-1(18),2,4,6(19),14,16-hexaene-3,9,15-triol,16,17-dimethoxy-, (9R)-