Hydrogenation reactions can be used to store energy in chemical bonds, and if these reactions are reversible, that energy can be released on demand. Some of the most effective transition metal catalysts for CO2 hydrogenation have featured pyridin-2-ol-based ligands (e.g., 6,6′-dihydroxybipyridine (6,6′-dhbp)) for both their proton-responsive features and for metal–ligand bifunctional catalysis. We aimed to compare bidentate pyridin-2-ol based ligands with a new scaffold featuring an N-heterocyclic carbene (NHC) bound to pyridin-2-ol. Toward this aim, we have synthesized a series of [Cp*Ir(NHC-pyOR)Cl]OTf complexes where R = tBu (1), H (2), or Me (3). For comparison, we tested analogous bipy-derived iridium complexes as catalysts, specifically [Cp*Ir(6,6′-dxbp)Cl]OTf, where x = hydroxy (4Ir) or methoxy (5Ir); 4Ir was reported previously, but 5Ir is new. The analogous ruthenium complexes were also tested using [(η6-cymene)Ru(6,6′-dxbp)Cl]OTf, where x = hydroxy (4Ru) or methoxy (5Ru); 4Ru and 5Ru were both reported previously. All new complexes were fully characterized by spectroscopic and analytical methods and by single-crystal X-ray diffraction for 1, 2, 3, 5Ir, and for two [Ag(NHC-pyOR)2]OTf complexes 6 (R = tBu) and 7 (R = Me). The aqueous catalytic studies of both CO2 hydrogenation and formic acid dehydrogenation were performed with catalysts 1–5. In general, NHC-pyOR complexes 1–3 were modest precatalysts for both reactions. NHC complexes 1–3 all underwent transformations under basic CO2 hydrogenation conditions, and for 3, we trapped a product of its transformation, 3SP, which we characterized crystallographically. For CO2 hydrogenation with base and dxbp-based catalysts, we observed that x = hydroxy (4Ir) is 5–8 times more active than x = methoxy (5Ir). Notably, ruthenium complex 4Ru showed 95% of the activity of 4Ir. For formic acid dehydrogenation, the trends were quite different with catalytic activity showing 4Ir ≫ 4Ru and 4Ir ≈ 5Ir. Secondary coordination sphere effects are important under basic hydrogenation conditions where the OH groups of 6,6′-dhbp are deprotonated and alkali metals can bind and help to activate CO2. Computational DFT studies have confirmed these trends and have been used to study the mechanisms of both CO2 hydrogenation and formic acid dehydrogenation.

Nine new polycyclic aromatic BN-1,2-azaborine analogues containing the N-BOH moiety were synthesized using a convenient two-step, one-pot procedure. Characterization of the prepared compounds show the luminescence wavelength and the quantum yields of the azaborines were tunable by controlling the power and location of the donor and acceptor substituents on the chromophore. UV-visible spectroscopy and density functional theory (DFT) computations revealed that the addition of electron-donating moieties to the isoindolinone hemisphere raised the energy of the HOMO, resulting in the reduction of the HOMO–LUMO gap. The addition of an electron-accepting moiety to the isoindolinone hemisphere and an electron-donating group to the boronic acid hemisphere decreased the HOMO–LUMO gap considerably, leading to emission properties from partial intramolecular charge transfer (ICT) states. The combined effect of an acceptor on the isoindolinone side and a donor on the boronic acid side (strong acceptor–π-donor) gave the most red-shifted absorption. The polycyclic aromatic BN-1,2-azaborines emitted strong fluorescence in solution and in the solid-state with the largest red-shifted emission at 640 nm and a Stokes shift of Δλ = 218 nm, or Δν = 8070 cm−1.

A CCC-NHC pincer Ni(II)Cl complex was prepared according to the metallation/transmetallation methodology. It was fully characterized by electrochemical, NMR spectroscopic, theoretical, and X-ray crystallographic methods. The complex and its cation were evaluated for electrocatalytic reduction of CO2 under a variety of conditions and found to provide some of the fastest catalytic rates and highest substrate selectivities (CO2vs. H+) reported. Rates improved in the presence of water and, significantly, catalysis occurred at the first reduction potential, presumably at the Ni(I) state. Controlled potential electrolysis (CPE) was found to yield CO at 34% and formate at 47% Faradaic efficiency (FE).

As a member of the histidine triad (HIT) protein superfamily, human histidine triad nucleotide binding protein 1 (hHint1) serves as an efficient enzyme in the hydrolysis of phosphoramidate. In particular, hHint1 has been utilized to activate nucleotide prodrugs (proTides). Understanding the mechanism of hHint1 will aid in the future design of proTides. Density functional theory (DFT) computations on a 228-atom cluster active-site model were performed to investigate the hydrolysis mechanism of a phosphoramidate substrate. The overall proposed mechanism included the key involvement of the histidine triad as a proton shuttle. Protonated methylphosphoramidate was first formed by proton transfer of protonated His114 species. A penta-coordinated phosphoryl intermediate, protonated methylphosphorodiamidate, was generated by a nucleophilic attack of His112. After the release of amine and the generation of a phosphorylated histidine intermediate, the nucleophilic attack of an active-site water produced a hydrolyzed intermediate that subsequently transferred a proton back to His114. A rate-determining fully associative pathway with a free energy of activation of 21.7 kcal mol−1 formed the penta-coordinated phosphoryl intermediate. A non-rate determining associative-interchange transition state was involved in the formation of transient tetra-coordinated phosphoryl intermediate. The overall hydrolysis was favorable by −16.1 kcal mol−1.

•CCC-NHC nickel pincer complexes were synthesised by metallation/transmetallation.•Raman was obtained for the chloride complex along with a simulated spectrum.•Cationic CCC-NHC pincer nickel complexes were made which exhibited polymorphism.•Coupling of NHC's from two different ligands, which were oxidized.The metallation/transmetallation strategy has been successfully applied to the preparation of CCC-NHC pincer nickel complexes. Manipulation of the coordination sphere lead to cationic CCC-NHC pincer nickel complexes. These were found to exhibit polymorphism in the solid state with significant differences in the intermolecular distances observed by X-ray crystallography. Three polymorphs were observed for the PF6− salt, and two were observed for the BF4− salt. When BPh4− was the counterion only one morphology was observed, and crystals grown of the triflate salt were too small for analysis. Details of the differences are documented for comparison. Additionally, during crystallization it was found that a rearrangement of the CCC-NHC ligand had occurred, involving coupling of an NHC from two different ligands, which were oxidized.Polymorph packing differences.Download high-res image (164KB)Download full-size image

A rare Ta bis(imido) complex, which has unique reactivity, was prepared by manipulating the coordination sphere of a CCC-NHC pincer Ta complex. The reaction of lithium tert-butylamide with complex 1 yielded (1,3-bis(3′-butylimidazol-2′-yl-1′-idene)-2-phenylene)bis(tert-butylimido)tantalum(V) (2) as a lithium iodide bridged dimer, as determined by the X-ray structure. Complex 2 catalytically cyclized α,ω-aminoalkenes to effect an oxidative amination of alkenes (dehydrogenation by C–H activation) and produced a cyclic imine, an equivalent of reduced substrate, and varying proportions of hydroamination. Various additives and concentration impact the catalytic results. Computational and experimental observations have led to an initial mechanistic hypothesis. Based upon it, precatalyst 2 appears to be the first example of a bifunctional catalyst (MH-NHR) that is highly selective for nonpolar C═C bonds in preference to polar C═X bonds for outer-sphere hydrogenation.

Acquisition of highly accurate energetic data for chromium-containing molecules and various chromium carbonyl complexes is a major step toward calibrating bond energies and thermal isomerization energies from mechanisms for Cr-centered photochromic materials being developed in our laboratories. The performance of six density functionals in conjunction with seven basis sets, utilizing Gaussian-type orbitals, has been evaluated for the calculation of gas-phase enthalpies of formation and enthalpies of reaction at 298.15 K on various chromium-containing systems. Nineteen molecules were examined: Cr(CO)6, Cr(CO)5, Cr(CO)5(C2H4), Cr(CO)5(C2ClH3), Cr(CO)5(cis-(C2Cl2H2)), Cr(CO)5(gem-(C2Cl2H2)), Cr(CO)5(trans-(C2Cl2H2)), Cr(CO)5(C2Cl3H), Cr(CO)5(C2Cl4), CrO2, CrF2, CrCl2, CrCl4, CrBr2, CrBr4, CrOCl2, CrO2Cl2, CrOF2, and CrO2F2. The performance of 69 density functionals in conjunction with a single basis set utilizing Slater-type orbitals (STO) and a zeroth-order relativistic approximation was also evaluated for the same test set. Values derived from density functional theory were compared to experimental values where available, or values derived from the correlation consistent composite approach (ccCA). When all reactions were considered, the functionals that exhibited the smallest mean absolute deviations (MADs, in kcal mol–1) from ccCA-derived values were B97-1 (6.9), VS98 (9.0), and KCIS (9.4) in conjunction with quadruple-ζ STO basis sets and B97-1 (9.3) in conjunction with cc-pVTZ basis sets. When considering only the set of gas-phase reaction enthalpies (ΔrH°gas), the functional that exhibited the smallest MADs from ccCA-derived values were B97-1 in conjunction with cc-pVTZ basis sets (9.1) and PBEPBE in conjunction with polarized valence triple-ζ basis set/effective core potential combination for Cr and augmented and multiple polarized triple-ζ Pople style basis sets (9.5). Also of interest, certainly because of known cancellation of errors, PBEPBE with the least-computationally expensive basis set combination considered in the present study (valence double-ζ basis set/effective core potential combination for Cr and singly-polarized double-ζ Pople style basis sets) also provided reasonable accuracy (11.1). An increase in basis set size was found to have an improvement in accuracy for the best performing functional (B97-1).

Treatment of 1,3-bis(3′-butylimidazolyl-1′-yl)benzene diiodide with elemental sulfur in the presence of a base produced a bis(N-heterocyclic thione) (NHT) pincer ligand precursor. Its reaction with PdCl2(CH3CN)2 produced chloro[1,3-bis(3′-butylimidazole-2′-thione-κ-S)benzene-κ-C]palladium(II), a 6,6-fused ring SCS-NHT palladium pincer complex. This air stable compound is, to our knowledge, the first SCS pincer complex that utilizes N-heterocyclic thione (NHT) donor groups. The molecular structures of the ligand precursor and the palladium complex were determined by X-ray crystallography and computational studies provided insight into the interconversion between its rac and meso conformations. The photophysical properties of the complex were established, and its catalytic activity in Suzuki, Heck, and Sonogashira cross-coupling reactions was evaluated.

Tyrosyl-DNA phosphodiesterase I (Tdp1) is a DNA repair enzyme conserved across eukaryotes that catalyzes the hydrolysis of the phosphodiester bond between the tyrosine residue of topoisomerase I and the 3′-phosphate of DNA. Atomic level details of the mechanism of Tdp1 are proposed and analyzed using a fully quantum mechanical, geometrically constrained model. The structural basis for the computational model is the vanadate-inhibited crystal structure of human Tdp1 (hTdp1, Protein Data Bank entry 1RFF). Density functional theory computations are used to acquire thermodynamic and kinetic data along the catalytic pathway, including the phosphoryl transfer and subsequent hydrolysis. Located transition states and intermediates along the reaction coordinate suggest an associative phosphoryl transfer mechanism with five-coordinate phosphorane intermediates. Similar to both theoretical and experimental results for phospholipase D, the proposed mechanism for hTdp1 also includes the thermodynamically favorable possibility of a four-coordinate phosphohistidine “dead-end” product.

•The trans–cis isomerization of Ni(TEMPO)2 has been modeled with Density Functional Theory.•The Ni(TEMPO)2 complex exhibits conformational complexity and fluxionality.•New visualization techniques are needed for conformational dynamics of Ni(TEMPO)2.Previously, reactions of the “bow-tie” Ni(η2-TEMPO)2 complex with an assortment of donor ligands have been characterized experimentally and computationally. The X-ray crystal structures afforded Ni(η2-TEMPO)2 with trans-disposed TEMPO ligands, which was validated theoretically. Experimentally, proton transfer from the C–H bond of a variety of alkyne substrates (R) mostly produced cis-disposed ligands of the form Ni(η2-TEMPO)(κ1-TEMPOH)(κ1-R). While computations validated that the experimentally observed cis-disposed products were thermodynamically favored, in all cases, the proposed mechanisms of alkyne addition to cis-Ni(η2-TEMPO)2 were kinetically disfavored. Therefore, a trans–cis isomerization must occur along the addition pathway. In order to better understand this phenomenon, an exhaustive theoretical conformational search of cis-/trans-Ni(η2-TEMPO)2 and Ni(η2-TEMPO)(η1-TEMPO) structures has been performed. Our results show profound conformational and fluxional complexity for the trans–cis isomerization of the Ni(η2-TEMPO)2 precursor. Surprisingly, the proposed mechanism for trans–cis isomerization indicates that conformational distortion of one of the TEMPO ligands of trans-Ni(η2-TEMPO)2 before ring-opening provides a transition state free energy of activation stabilization of nearly 4.0 kcal mol−1 versus the most “straightforward” isomerization mechanism.The trans–cis isomerization of Ni(TEMPO)2 exhibits fascinating conformational complexity and fluxionality of the coordinated TEMPO ligand. The mechanism of Ni(TEMPO)2 isomerization has been explored with Density Functional Theory. It is observed that conformational distortion of a TEMPO ring leads to lower ring-opening/ring-closing free energies of activation.

Competing degenerate pathways for ring inversion in organometallic complexes are proposed to be ubiquitous examples that adhere to the principle of microscopic reversibility. The NMR spectra for ring inversion of two chromium arene dicarbonyl pyridyl chelates ([Cr{η6-C6H5(CH2)n(2-Py-κN)}(CO)2]; 2-Py = 2-pyridyl, n = 2 (1), and 3 (2)) and a manganese cyclopentadienyl dicarbonyl methyl sulfide chelate ([Mn{η5-C5H4COC(SCH3)2(SCH3-κS)}(CO)2] (3)) were characterized via variable-temperature NMR spectroscopy and DFT theoretical calculations.

Treatment of 1,3-bis(3′-butylimidazolyl-1′-yl)benzene diiodide with elemental sulfur in the presence of a base produced a bis(N-heterocyclic thione) (NHT) pincer ligand precursor. Its reaction with PdCl2(CH3CN)2 produced chloro[1,3-bis(3′-butylimidazole-2′-thione-κ-S)benzene-κ-C]palladium(II), a 6,6-fused ring SCS-NHT palladium pincer complex. This air stable compound is, to our knowledge, the first SCS pincer complex that utilizes N-heterocyclic thione (NHT) donor groups. The molecular structures of the ligand precursor and the palladium complex were determined by X-ray crystallography and computational studies provided insight into the interconversion between its rac and meso conformations. The photophysical properties of the complex were established, and its catalytic activity in Suzuki, Heck, and Sonogashira cross-coupling reactions was evaluated.