Co-reporter:Courtney E. Wise and Thomas M. Makris
ACS Chemical Biology May 19, 2017 Volume 12(Issue 5) pp:1316-1316
Publication Date(Web):March 16, 2017
DOI:10.1021/acschembio.7b00081
The β-hydroxylation of l-histidine is the first step in the biosynthesis of the imidazolone base of the antifungal drug nikkomycin. The cytochrome P450 (NikQ) hydroxylates the amino acid while it is appended via a phosphopantetheine linker to the non-ribosomal peptide synthetase (NRPS) NikP1. The latter enzyme is comprised of an MbtH and single adenylation and thiolation domains, a minimal composition that allows for detailed binding and kinetics studies using an intact and homogeneous NRPS substrate. Electron paramagnetic resonance studies confirm that a stable complex is formed with NikQ and NikP1 when the amino acid is tethered. Size exclusion chromatography is used to further refine the principal components that are required for this interaction. NikQ binds NikP1 in the fully charged state, but binding also occurs when NikP1 is lacking both the phosphopantetheine arm and appended amino acid. This demonstrates that the interaction is mainly guided by presentation of the thiolation domain interface, rather than the attached amino acid. Electrochemistry and transient kinetics have been used to probe the influence of l-His-NikP1 binding on catalysis by NikQ. Unlike many P450s, the binding of substrate fails to induce significant changes on the redox potential and autoxidation properties of NikQ and slows down the binding of dioxygen to the ferrous enzyme to initiate catalysis. Collectively, these studies demonstrate a complex interplay between the NRPS maturation process and the recruitment and regulation of an auxiliary tailoring enzyme required for natural product biosynthesis.
Co-reporter:Chun H. Hsieh, Xiongyi Huang, José A. Amaya, Cooper D. Rutland, Carson L. Keys, John T. Groves, Rachel N. Austin, and Thomas M. Makris
Biochemistry July 5, 2017 Volume 56(Issue 26) pp:3347-3347
Publication Date(Web):June 12, 2017
DOI:10.1021/acs.biochem.7b00338
OleT is a cytochrome P450 enzyme that catalyzes the removal of carbon dioxide from variable chain length fatty acids to form 1-alkenes. In this work, we examine the binding and metabolic profile of OleT with shorter chain length (n ≤ 12) fatty acids that can form liquid transportation fuels. Transient kinetics and product analyses confirm that OleT capably activates hydrogen peroxide with shorter substrates to form the high-valent intermediate Compound I and largely performs C–C bond scission. However, the enzyme also produces fatty alcohol side products using the high-valent iron oxo chemistry commonly associated with insertion of oxygen into hydrocarbons. When presented with a short chain fatty acid that can initiate the formation of Compound I, OleT oxidizes the diagnostic probe molecules norcarane and methylcyclopropane in a manner that is reminiscent of reactions of many CYP hydroxylases with radical clock substrates. These data are consistent with a decarboxylation mechanism in which Compound I abstracts a substrate hydrogen atom in the initial step. Positioning of the incipient substrate radical is a crucial element in controlling the efficiency of activated OH rebound.
Co-reporter:Courtney E. Wise;Job L. Grant
JBIC Journal of Biological Inorganic Chemistry 2017 Volume 22( Issue 2-3) pp:
Publication Date(Web):
DOI:10.1007/s00775-016-1425-0
Co-reporter:Jose A. Amaya, Cooper D. Rutland, Thomas M. Makris
Journal of Inorganic Biochemistry 2016 Volume 158() pp:11-16
Publication Date(Web):May 2016
DOI:10.1016/j.jinorgbio.2016.02.031
•A CYP152 from Methylobacterium populi was cloned, overexpressed and characterized.•Alkene formation is more efficient with longer chain length substrates.•Fatty acid hydroxylation regiospecificity shows chain length dependence.Intensive interest has focused on enzymes that are capable of synthesizing hydrocarbons, alkenes and alkanes, for sustainable fuel production. A recently described cytochrome P450 (OleTJE) from the CYP152 family catalyzes an unusual carbon–carbon scission reaction, transforming Cn fatty acids to Cn − 1 1-alkenes. Here, we show that a second CYP152, CYP-MP from Methylobacterium populi ATCC BAA 705, also catalyzes oxidative substrate decarboxylation. Alkene production is accompanied with the production of fatty alcohol products, underscoring the mechanistic similarity of the decarboxylation reaction with canonical P450 monooxygenation chemistry. The branchpoint of these two chemistries, and regiospecificity of oxidation products, is strongly chain length dependent, suggesting an importance of substrate coordination for regulating alkene production.A CYP152 from Methylobacterium populi was evaluated for alkene formation with a panel of fatty acid chain length substrates. The enzyme shows poor chemoselectivity for oxidative decarboxylation, and a large distribution of hydroxy fatty acid products. These results suggest that substrate coordination may modulate CYP152 decarboxylase efficiency.
Co-reporter:Job L. Grant;Megan E. Mitchell;Thomas Michael Makris
PNAS 2016 Volume 113 (Issue 36 ) pp:10049-10054
Publication Date(Web):2016-09-06
DOI:10.1073/pnas.1606294113
OleT is a cytochrome P450 that catalyzes the hydrogen peroxide-dependent metabolism of Cn chain-length fatty acids to synthesize Cn-1 1-alkenes. The decarboxylation reaction provides a route for the production of drop-in hydrocarbon fuels from a renewable
and abundant natural resource. This transformation is highly unusual for a P450, which typically uses an Fe4+−oxo intermediate known as compound I for the insertion of oxygen into organic substrates. OleT, previously shown to form
compound I, catalyzes a different reaction. A large substrate kinetic isotope effect (≥8) for OleT compound I decay confirms
that, like monooxygenation, alkene formation is initiated by substrate C−H bond abstraction. Rather than finalizing the reaction
through rapid oxygen rebound, alkene synthesis proceeds through the formation of a reaction cycle intermediate with kinetics,
optical properties, and reactivity indicative of an Fe4+−OH species, compound II. The direct observation of this intermediate, normally fleeting in hydroxylases, provides a rationale
for the carbon−carbon scission reaction catalyzed by OleT.
Co-reporter:Job L. Grant; Chun H. Hsieh
Journal of the American Chemical Society 2015 Volume 137(Issue 15) pp:4940-4943
Publication Date(Web):April 5, 2015
DOI:10.1021/jacs.5b01965
OleTJE, a cytochrome P450, catalyzes the conversion of fatty acids to terminal alkenes using hydrogen peroxide as a cosubstrate. Analytical studies with an eicosanoic acid substrate show that the enzyme predominantly generates nonadecene and that carbon dioxide is the one carbon coproduct of the reaction. The addition of hydrogen peroxide to a deuterated substrate–enzyme (E–S) complex results in the transient formation of an iron(IV) oxo π cation radical (Compound I) intermediate which is spectroscopically indistinguishable from those that perform oxygen insertion chemistries. A kinetic isotope effect for Compound I decay suggests that it abstracts a substrate hydrogen atom to initiate fatty acid decarboxylation. Together, these results indicate that the initial mechanism for alkene formation, which does not result from oxygen rebound, is similar to that widely suggested for P450 monooxygenation reactions.