Kazuya Koumoto

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Organization: Konan University
Department: Department of Nanobiochemistry, FIRST (Frontiers of Innovative Research in Science and Technology)
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Co-reporter:Shiro Sehata;Ryojun Suzuki
Bioprocess and Biosystems Engineering 2017 Volume 40( Issue 1) pp:153-159
Publication Date(Web):2017 January
DOI:10.1007/s00449-016-1684-8
β-Glucosidases (EC 3.2.1.21), abundant enzymes distributed in animals, plants and microorganism, has been generating lots of attentions for bioethanol production from cellulosic biomass. In this study, using three different origins of β-glucosidases, glucose productivity of β-glucosidase-catalyzed hydrolysis reactions in the presence of synthetic betaine-type metabolite analog (2-N,N,N-tri-n-butylammonium) acetate, was investigated. By the addition of the analog, the hydrolysis yields for all β-glucosidases was highly improved from 4–13 to 64–100 %. To understand the factors affecting on the yield enhancements, the kinetic parameters, inhibition constants of end-product and temporal stability of β-glucosidases were compared. As a result, enhancement of the yields is mainly related to the increase in the temporal stability of β-glucosidases in the presence of the analog. The present findings lead to not only improve the glucose productivity of β-glucosidase-catalyzed hydrolysis reaction toward bioethanol production but also apply to a new stabilization method for various unstable enzymes.
Co-reporter:Koji Nagahama, Takayuki Kumano, Yuichi Nakagawa, Naho Oyama, Hirokazu Tsuji, Kaoru Moriyama, Kan Shida, Koji Nomoto, Katsuyoshi Chiba, Kazuya Koumoto, and Jun Matsui
Bioconjugate Chemistry 2015 Volume 26(Issue 8) pp:1775
Publication Date(Web):July 23, 2015
DOI:10.1021/acs.bioconjchem.5b00319
The design and synthesis of materials capable of activating the immune system in a safe manner is of great interest in immunology and related fields. Lactobacilli activate the innate immune system of a host when acting as probiotics. Here, we constructed lactobacilli-mimicking materials in which polysaccharide–peptidoglycan complexes (PS–PGs) derived from lactobacilli were covalently conjugated to the surfaces of polymeric microparticles with a wide variety of sizes, ranging from 200 nm to 3 μm. The artificial lactobacilli successfully stimulated macrophages without cytotoxicity. Importantly, we found that the size of artificial lactobacilli strongly influenced their immunostimulating activities, and that artificial lactobacilli of 1 μm exhibited 10-fold higher activity than natural lactobacilli. One major advantage of the artificial lactobacilli is facile control of size, which cannot be changed in natural lactobacilli. These findings provide new insights into the design of materials for immunology as well as the molecular biology of lactobacillus.
Co-reporter:Yuichi Nakagawa;Masahiro Sota
Biotechnology Letters 2015 Volume 37( Issue 8) pp:1607-1613
Publication Date(Web):2015 August
DOI:10.1007/s10529-015-1841-1
To evaluate an analog library of betaine-type cellular metabolites, which are naturally found in polar fish for survival in subzero temperatures, for preventing denaturation of enzymes during freezing.Comparison of the cryoprotective ability of reported cryoprotectants, such as dimethylsulfoxide, glycerol, ectoine, hydroxyectoine, and trehalose, with betaine-type analogs using α-glucosidase revealed that analogs introducing C3–C6 alkyl chains into an ammonium cation retained 20 % higher activity than the control cryoprotectants at the same concentration. In particular, the analog possessing triplicate n-butyl chains showed a profound effect. It allowed retention of enzyme activity to 95 % even after 100 freeze–thaw cycles, while addition of the control cryoprotectants decreased the activity to 10–20 %. The cryoprotective ability of betaine-type analogs can be applied not only to α-glucosidase but also other enzymes such as β-glucosidase, alkaline phosphatase, lactose dehydrogenase, sulfatase, and horseradish peroxidase.Synthetic betaine-type metabolite analogs possess practicable cryoprotective ability for various enzymes, and are considerably superior to previously reported cryoprotectants.
Co-reporter:Yuichi Nakagawa;Kotomi Takagi;Ryutaro Genjima
Bioprocess and Biosystems Engineering 2015 Volume 38( Issue 9) pp:1811-1817
Publication Date(Web):2015/09/01
DOI:10.1007/s00449-015-1422-7
Using synthetic sulfobetaine library, the enzyme activation behavior has been investigated. Comparison of enzyme activation behavior revealed that sulfobetaines equally facilitate enzyme reactions, being consistent with that of carboxybetaines. The subsequent kinetic and solution property analyses clarified that both the kinetic parameter and hydration property changes are identical with those of carboxybetaines, indicating that the difference in the anionic functional group of the betaine structure scarcely affects the enzyme activation. On the other hand, comparison of carboxy- or sulfo-betaines with tetraalkylammonium salts, whose counteranion binds to the ammonium cation intermolecularly, revealed that the activation ability for enzymes of tetraalkylammonium salts is considerably smaller than that of carboxy- or sulfo-betaines. These findings give us a hint to design the useful betaine-type enzyme activators.
Co-reporter:Yuichi Nakagawa, Shiro Sehata, Satoshi Fujii, Hiroaki Yamamoto, Akihiko Tsuda, Kazuya Koumoto
Tetrahedron 2014 70(35) pp: 5895-5903
Publication Date(Web):
DOI:10.1016/j.tet.2014.06.028
Co-reporter:Eisuke Deguchi, Kazuya Koumoto
Bioorganic & Medicinal Chemistry 2011 Volume 19(Issue 10) pp:3128-3134
Publication Date(Web):15 May 2011
DOI:10.1016/j.bmc.2011.04.003
We investigated the structural effects of metabolite analogs derived from a naturally-occurring zwitterionic metabolite, glycine betaine, on the activity of several hydrolases. The initial velocities of the hydrolases were enhanced by the addition of the solutes into the buffer solution. Based on a detailed study using α-glucosidases, the acceleration efficiency of the enzymatic activity was strongly induced by solutes possessing bulky and aliphatic ammonium cations, indicating that enhancement of activity by the solutes depended on their chemical structures. Kinetic analysis revealed that the acceleration of the hydrolysis reaction was related to both the decrement of Km and increment of Vmax values. Furthermore, the addition of the metabolite analogs enhanced not only the rate constant but also the thermostability, salt tolerance, and substrate specificity of α-glucosidase simultaneously through the reduction of conformational perturbation of the enzyme.
(N-carboxymethyl)-N-methylpiperidinium inner salt
1-Propanesulfonic acid,3-[ethyl(3-methylphenyl)amino]-2-hydroxy-
6-Benzothiazolesulfonicacid, 2,2'-(1,2-hydrazinediylidene)bis[3-ethyl-2,3-dihydro-
OXIBETAINE
(4-HYDROXY-4-OXOBUTYL)-TRIMETHYLAZANIUM
2-(tributylazaniumyl)acetate