Emmanuel A. Theodorakis

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Name: Theodorakis, Emmanuel
Organization: University of California , USA
Department: Department of Chemistry and Biochemistry
Title: Professor(PhD)

TOPICS

Co-reporter:Mark A. Haidekker and Emmanuel A. Theodorakis  
Journal of Materials Chemistry A 2016 vol. 4(Issue 14) pp:2707-2718
Publication Date(Web):14 Jan 2016
DOI:10.1039/C5TC03504J
Fluorescent molecules, with their almost instantaneous response to external influences and relatively low-cost measurement instrumentation, have been attractive analytical tools and biosensors for centuries. More recently, advanced chemical synthesis and targeted design have accelerated the development of fluorescent probes. This article focuses on dyes with segmental mobility (known as fluorescent molecular rotors) that act as mechanosensors, which are known for their relationship of emission quantum yield with microviscosity. Fluorescence lifetime is directly related to quantum yield, but steady-state emission intensity is not. To remove confounding factors with steady-state instrumentation, dual-band emission dyes can be used, and molecular rotors have been developed that either have intrinsic dual emission or that have a non-sensitive reference unit to provide a calibration emission band. We report on theory, chemical structure, applications and targeted design of several classes of dual-emission molecular rotors.
Co-reporter:Michelle H. Lacoske and Emmanuel A. Theodorakis
Journal of Natural Products 2015 Volume 78(Issue 3) pp:562-575
Publication Date(Web):December 1, 2014
DOI:10.1021/np500757w
The discovery of chlorothricin (1) defined a new family of microbial metabolites with potent antitumor antibiotic properties collectively referred to as spirotetronate polyketides. These microbial metabolites are structurally distinguished by the presence of a spirotetronate motif embedded within a macrocyclic core. Glycosylation at the periphery of this core contributes to the structural complexity and bioactivity of this motif. The spirotetronate family displays impressive chemical structures, potent bioactivities, and significant pharmacological potential. This review groups the family members based on structural and biosynthetic considerations and summarizes synthetic and biological studies that aim to elucidate their mode of action and explore their pharmacological potential.
Co-reporter:Laura S. Kocsis, Kristyna M. Elbel, Billie A. Hardigree, Kay M. Brummond, Mark A. Haidekker and Emmanuel A. Theodorakis  
Organic & Biomolecular Chemistry 2015 vol. 13(Issue 10) pp:2965-2973
Publication Date(Web):13 Jan 2015
DOI:10.1039/C4OB02563F
We describe the design, synthesis and fluorescent profile of a family of environment-sensitive dyes in which a dimethylamino (donor) group is conjugated to a cyanoacrylate (acceptor) unit via a cyclopenta[b]naphthalene ring system. This assembly satisfies the typical D–π-A motif of a fluorescent molecular rotor and exhibits solvatochromic and viscosity-sensitive fluorescence emission. The central naphthalene ring system of these dyes was synthesized via a novel intramolecular dehydrogenative dehydro-Diels–Alder (IDDDA) reaction that permits incorporation of the donor and acceptor groups in variable positions around the aromatic core. A bathochromic shift of excitation and emission peaks was observed with increasing solvent polarity but the dyes exhibited a complex emission pattern with a second red emission band when dissolved in nonpolar solvents. Consistent with other known molecular rotors, the emission intensity increased with increasing viscosity. Interestingly, closer spatial proximity between the donor and the acceptor groups led to decreased viscosity sensitivity combined with an increased quantum yield. This observation indicates that structural hindrance of intramolecular rotation dominates when the donor and acceptor groups are in close proximity. The examined compounds give insight into how excited state intramolecular rotation can be influenced by both the solvent and the chemical structure.
Co-reporter:Dr. Jing Xu;Michelle H. Lacoske ;Dr. Emmanuel A. Theodorakis
Angewandte Chemie International Edition 2014 Volume 53( Issue 4) pp:956-987
Publication Date(Web):
DOI:10.1002/anie.201302268

Abstract

Neurodegenerative diseases and spinal cord injury affect approximately 50 million people worldwide, bringing the total healthcare cost to over 600 billion dollars per year. Nervous system growth factors, that is, neurotrophins, are a potential solution to these disorders, since they could promote nerve regeneration. An average of 500 publications per year attests to the significance of neurotrophins in biomedical sciences and underlines their potential for therapeutic applications. Nonetheless, the poor pharmacokinetic profile of neurotrophins severely restricts their clinical use. On the other hand, small molecules that modulate neurotrophic activity offer a promising therapeutic approach against neurological disorders. Nature has provided an impressive array of natural products that have potent neurotrophic activities. This Review highlights the current synthetic strategies toward these compounds and summarizes their ability to induce neuronal growth and rehabilitation. It is anticipated that neurotrophic natural products could be used not only as starting points in drug design but also as tools to study the next frontier in biomedical sciences: the brain activity map project.

Co-reporter:Dr. Jing Xu;Michelle H. Lacoske ;Dr. Emmanuel A. Theodorakis
Angewandte Chemie International Edition 2014 Volume 53( Issue 4) pp:
Publication Date(Web):
DOI:10.1002/anie.201311005
Co-reporter:Dr. Jing Xu;Michelle H. Lacoske ;Dr. Emmanuel A. Theodorakis
Angewandte Chemie 2014 Volume 126( Issue 4) pp:972-1004
Publication Date(Web):
DOI:10.1002/ange.201302268

Abstract

Neurodegenerative Erkrankungen und Rückenmarksverletzungen betreffen weltweit etwa 50 Millionen Menschen und verursachen Gesundheitskosten von insgesamt mehr als 600 Milliarden Dollar pro Jahr. Nervenwachstumsfaktoren, d. h. Neurotrophine, sind potenzielle Therapeutika für diese Erkrankungen, denn sie können die Regeneration von Nerven fördern. Durchschnittlich 500 Publikationen jährlich belegen die Bedeutung der Neurotrophine in den biomedizinischen Wissenschaften und ihr Potenzial für therapeutische Anwendungen. Allerdings ist die klinische Verwendung von Neurotrophinen wegen ihres schlechten pharmakokinetischen Profils stark eingeschränkt. Niedermolekulare Verbindungen, die die neurotrophe Aktivität modulieren, bieten hingegen einen vielversprechenden Therapieansatz bei neurologischen Erkrankungen. Die Natur hat für eine beeindruckende Zahl von Naturstoffen mit starken neurotrophen Wirkungen gesorgt. Die aktuellen Strategien zur Synthese dieser Verbindungen sowie deren Fähigkeit, das Wachstum und die Erneuerung von Nervenzellen zu induzieren, bilden den Schwerpunkt dieses Aufsatzes. Es ist davon auszugehen, dass neurotrophe Naturstoffe nicht nur als Leitstrukturen in der Wirkstoffentwicklung genutzt werden können, sondern auch für das nächste große Projekt der Biomedizin: die Kartierung der Hirnaktivität (BAM, Brain Activity Map).

Co-reporter:Dr. Jing Xu;Michelle H. Lacoske ;Dr. Emmanuel A. Theodorakis
Angewandte Chemie 2014 Volume 126( Issue 4) pp:
Publication Date(Web):
DOI:10.1002/ange.201311005
Co-reporter:Alec Saitman and Emmanuel A. Theodorakis
Organic Letters 2013 Volume 15(Issue 10) pp:2410-2413
Publication Date(Web):April 30, 2013
DOI:10.1021/ol400872h
An efficient stereoselective synthesis of furanoverrillin (5), a highly functionalized core of verrillin (1), is reported. The synthetic strategy is based on constructing bicyclic lactone 17 prior to the 10-membered ring macrocyclization. The effect of the C4 methyl group on the furan reactivity is also discussed.
Co-reporter:Kristyna M. Elbel, Gianni Guizzunti, Maria A. Theodoraki, Jing Xu, Ayse Batova, Marianna Dakanali and Emmanuel A. Theodorakis  
Organic & Biomolecular Chemistry 2013 vol. 11(Issue 20) pp:3341-3348
Publication Date(Web):25 Mar 2013
DOI:10.1039/C3OB40395E
Natural products of the caged Garcinia xanthones (CGX) family are characterized by a unique chemical structure, potent bioactivities and promising pharmacological profiles. We have developed a Claisen/Diels–Alder reaction cascade that, in combination with a Pd(0)-catalyzed reverse prenylation, provides rapid and efficient access to the CGX pharmacophore, represented by the structure of cluvenone. To further explore this pharmacophore, we have synthesized various A-ring oxygenated analogues of cluvenone and have evaluated their bioactivities in terms of growth inhibition, mitochondrial fragmentation, induction of mitochondrial-dependent cell death and Hsp90 client inhibition. We found that installation of an oxygen functionality at various positions of the A-ring influences significantly both the site-selectivity of the Claisen/Diels–Alder reaction and the bioactivity of these compounds, due to remote electronic effects.
Co-reporter:Alec Saitman, Steven D.E. Sullivan, Emmanuel A. Theodorakis
Tetrahedron Letters 2013 Volume 54(Issue 12) pp:1612-1615
Publication Date(Web):20 March 2013
DOI:10.1016/j.tetlet.2013.01.085
An efficient strategy for the construction of C13-oxidized cembrenolides is reported. Central to this strategy is the installation of the C13 hydroxyl group prior to cembrane macrocyclization (via formation of the C1–C2 bond), allowing access to both C13 alcohol epimers. The orientation of the C13 alcohol was found to influence the cyclization mode of the cembranolide scaffold upon furan oxidation, leading to motifs reminiscent to bipinnatolide F, bielschowskysin, and verrillin.
Co-reporter:Dr. Lynnie Trzoss;Dr. Jing Xu;Michelle H. Lacoske;Dr. William C. Mobley;Dr. Emmanuel A. Theodorakis
Chemistry - A European Journal 2013 Volume 19( Issue 20) pp:6398-6408
Publication Date(Web):
DOI:10.1002/chem.201300198

Abstract

Majucin-type sesquiterpenes from Illicium sp., such as jiadifenolide (2), jiadifenin (3), and (1R,10S)-2-oxo-3,4-dehydroxyneomajucin (4, ODNM), possess a complex caged chemical architecture and remarkable neurotrophic activities. As such, they represent attractive small-molecule leads against various neurodegenerative diseases. We present an efficient, enantioselective, and unified synthesis of 2, 3, and 4 and designed analogues that diverge from tetracyclic key intermediate 7. The synthesis of 7 is highlighted by the use of an enantioselective Robinson annulation reaction (construction of the AB rings), a Pd-mediated carbomethoxylation reaction (construction of the C ring), and a one-pot oxidative reaction cascade (construction of the D ring). Evaluation of the neurotrophic activity of these compounds led to the identification of several highly potent small molecules that significantly enhanced the activity of nerve growth factor (NGF) in PC-12 cells. Moreover, efforts to define the common pharmacophoric motif suggest that substitution at the C-10 center significantly affects bioactivity, while the hemiketal moiety of 2 and 3 and the C-1 substitution might not be critical to the neurotrophic activity.

Co-reporter:Jing Xu ; Eduardo J. E. Caro-Diaz ; Lynnie Trzoss
Journal of the American Chemical Society 2012 Volume 134(Issue 11) pp:5072-5075
Publication Date(Web):March 2, 2012
DOI:10.1021/ja300807e
A concise, protecting group-free total synthesis of (−)-fusarisetin A (1) was efficiently achieved in nine steps from commercially available (S)-(−)-citronellal. The synthetic approach was inspired by our proposed biosynthesis of 1. Key transformations of our strategy include a facile construction of the decalin moiety that is produced via a stereoselective IMDA reaction and a one-pot TEMPO-induced radical cyclization/aminolysis that forms the C ring of 1. Our route is amenable to analogue synthesis for biological evaluation.
Co-reporter:Jing Xu, Eduardo J. E. Caro-Diaz, Michelle H. Lacoske, Chao-I. Hung, Colin Jamora and Emmanuel A. Theodorakis  
Chemical Science 2012 vol. 3(Issue 12) pp:3378-3386
Publication Date(Web):23 Aug 2012
DOI:10.1039/C2SC21308G
Fusarisetin A (1) is a recently isolated natural product that displays an unprecedented chemical motif and remarkable bioactivities as a potent cancer migration inhibitor. We describe here our studies leading to an efficient and scalable total synthesis of 1. Essential to the strategy was the development of a new route for the formation of a trans-decalin moiety of this compound and the application of an oxidative radical cyclization (ORC) reaction that produces fusarisetin A (1) from equisetin (2) via a bio-inspired process. TEMPO-induced and metal/O2-promoted ORC reactions were evaluated. Biological screening in vitro confirms the reported potency of (+)-1. Importantly, ex vivo studies show that this compound is able to inhibit different types of cell migration. Moreover, the C5 epimer of (+)-1 was also identified as a potent cancer migration inhibitor, while (−)-1 and 2 were found to be significantly less potent. The optimized synthesis is applicable on gram scale and provides a solid platform for analogue synthesis and methodical biological study.
Co-reporter:Saúl Martínez-Montero, Susana Fernández, Yogesh S. Sanghvi, Emmanuel A. Theodorakis, Mervi A. Detorio, Tamara R. Mcbrayer, Tony Whitaker, Raymond F. Schinazi, Vicente Gotor, Miguel Ferrero
Bioorganic & Medicinal Chemistry 2012 Volume 20(Issue 23) pp:6885-6893
Publication Date(Web):1 December 2012
DOI:10.1016/j.bmc.2012.09.026
A series of 2′,3′-dideoxy-2′,2′-difluoro-4′-azanucleosides of both pyrimidine and purine nucleobases were synthesized in an efficient manner starting from commercially available L-pyroglutamic acid via glycosylation of difluorinated pyrrolidine derivative 15. Several 4′-azanucleosides were prepared as a separable mixture of α- and β-anomers. The 6-chloropurine analogue was obtained as a mixture of N7 and N9 regioisomers and their structures were identified based on NOESY and HMBC spectral data. Among the 4′-azanucleosides tested as HIV-1 inhibitors in primary human lymphocytes, four compounds showed modest activity and the 5-fluorouracil analogue (18d) was found to be the most active compound (EC50 = 36.9 μM) in this series. None of the compounds synthesized in this study demonstrated anti-HCV activity.
Co-reporter:Marianna Dakanali, Thai H. Do, Austin Horn, Akaraphon Chongchivivat, Tuptim Jarusreni, Darcy Lichlyter, Gianni Guizzunti, Mark A. Haidekker, Emmanuel A. Theodorakis
Bioorganic & Medicinal Chemistry 2012 Volume 20(Issue 14) pp:4443-4450
Publication Date(Web):15 July 2012
DOI:10.1016/j.bmc.2012.05.026
We describe the design, synthesis and fluorescence profiles of new self-calibrating viscosity dyes in which a coumarin (reference fluorophore) has been covalently linked with a molecular rotor (viscosity sensor). Characterization of their fluorescence properties was made with separate excitation of the units and through resonance energy transfer from the reference to the sensor dye. We have modified the linker and the substitution of the rotor in order to change the hydrophilicity of these probes thereby altering their subcellular localization. For instance, hydrophilic dye 12 shows a homogeneous distribution inside the cell and represents a suitable probe for viscosity measurements in the cytoplasm.
Co-reporter:Dr. Jing Xu;Eduardo J. E. Caro-Diaz;Dr. Ayse Batova;Steven D. E. Sullivan ;Dr. Emmanuel A. Theodorakis
Chemistry – An Asian Journal 2012 Volume 7( Issue 5) pp:1052-1060
Publication Date(Web):
DOI:10.1002/asia.201101021

Abstract

An efficient formal synthesis of (−)-englerin A (1) is reported. The target molecule is a recently isolated guaiane sesquiterpene that possesses highly potent and selective activity against renal cancer cell-lines. Our enantioselective strategy involved the construction of the BC ring system of compound 1 through a RhII-catalyzed [4+3] cycloaddition reaction followed by subsequent attachment of the A ring through an intramolecular aldol condensation reaction. As such, this strategy allows the synthesis of truncated englerins. Evaluation of these analogues with the A498 renal cancer cell-line suggested that the A ring of englerin is crucial to its antiproliferative activity. Moreover, evaluation of these analogues led to the identification of potent growth-inhibitors of CEM cells with GI50 values in the range 1–3 μM.

Co-reporter:Dr. Gianni Guizzunti;Dr. Ayse Batova;Dr. Oraphin Chantarasriwong;Dr. Marianna Dakanali; Dr. Emmanuel A. Theodorakis
ChemBioChem 2012 Volume 13( Issue 8) pp:1191-1198
Publication Date(Web):
DOI:10.1002/cbic.201200065

Abstract

The natural product gambogic acid (GA) has shown significant potential as an anticancer agent as it is able to induce apoptosis in multiple tumor cell lines, including multidrug-resistant cell lines, as well as displaying antitumor activity in animal models. Despite the fact that GA has entered phase I clinical trials, the primary cellular target and mode of action of this compound remain unclear, although many proteins have been shown to be affected by it. By thorough analysis of several cellular organelles, at both the morphological and functional levels, we demonstrate that the primary effect of GA is at the mitochondria. We found that GA induces mitochondrial damage within minutes of incubation at low-micromolar concentrations. Moreover, a fluorescent derivative of GA was able to localize specifically to the mitochondria and was displaced from these organelles after competition with unlabeled GA. These findings indicate that GA directly targets the mitochondria to induce the intrinsic pathway of apoptosis, and thus represents a new member of the mitocans.

Co-reporter:Thong X. Nguyen, Marianna Dakanali, Lynnie Trzoss, and Emmanuel A. Theodorakis
Organic Letters 2011 Volume 13(Issue 13) pp:3308-3311
Publication Date(Web):May 26, 2011
DOI:10.1021/ol200966z
An enantioselective strategy for the synthesis of tetracyclic motif 5, representing the northern fragment of norzoanthamine, is presented. Key to the strategy is the use of two asymmetric Robinson annulation reactions that produce the tricyclic ABC ring system with excellent stereoselectivity. Further functionalization at the periphery of the C ring produces compound 5 containing six contiguous stereocenters of the natural product.
Co-reporter:Lynnie Trzoss, Jing Xu, Michelle H. Lacoske, William C. Mobley, and Emmanuel A. Theodorakis
Organic Letters 2011 Volume 13(Issue 17) pp:4554-4557
Publication Date(Web):August 3, 2011
DOI:10.1021/ol201742j
The first enantioselective synthesis of (−)-jiadifenin (1), a potent neurite outgrowth promoter isolated from the Illicium species, is described. The synthetic strategy builds upon bicyclic motif 6, which represents the AB ring of the natural product and proceeds in 19 steps and 1.1% overall yield. Key to our approach is a Mn(III)-mediated oxidation reaction of A ring that, following a regio- and diastereoselective α-hydroxylation and methylation sequence, produces the desired functionalities of (−)-jiadifenin. The effect of synthetic 1 in NGF-mediated neurite outgrowth was also measured in PC-12 cells.
Co-reporter:Hyung-Jo Yoon, Marianna Dakanali, Darcy Lichlyter, Willy M. Chang, Karen A. Nguyen, Matthew E. Nipper, Mark A. Haidekker and Emmanuel A. Theodorakis  
Organic & Biomolecular Chemistry 2011 vol. 9(Issue 9) pp:3530-3540
Publication Date(Web):24 Mar 2011
DOI:10.1039/C0OB01042A
We describe the design, synthesis and fluorescent profile of a family of self-calibrating dyes that provide ratiometric measurements of fluid viscosity. The design is based on covalently linking a primary fluorophore (reference) that displays a viscosity-independent fluorescence emission with a secondary fluorophore (sensor) that exhibits a viscosity-sensitive fluorescence emission. Characterization of fluorescent properties was made with separate excitation of the units and through Resonance Energy Transfer from the reference to the sensor dye. The chemical structures of both fluorophores and the linker length have been evaluated in order to optimize the overall brightness and sensitivity of the viscosity measurements. We also present an application of such ratiometric dyes for the detection of membrane viscosity changes in a liposome model.
Co-reporter:Willy M. Chang, Marianna Dakanali, Christina C. Capule, Christina J. Sigurdson, Jerry Yang, and Emmanuel A. Theodorakis
ACS Chemical Neuroscience 2011 Volume 2(Issue 5) pp:249
Publication Date(Web):March 21, 2011
DOI:10.1021/cn200018v
A new family of fluorescent markers containing an amino naphthalenyl-2-cyano-acrylate (ANCA) motif has been synthesized and evaluated for its capability to associate with aggregated β-amyloid (Aβ) peptides. These fluorescent probes contain a nitrogen donor group that is connected via a naphthalene unit to an electron acceptor motif containing water solubilizing groups (WSGs). Chemical modifications were introduced to explore their effect on the capability of the ANCA-based probes to fluorescently label aggregated Aβ peptides. All synthesized probes bind to aggregated Aβ fibrils with low micromolar affinity and fluorescently stain amyloid deposits in human brain tissue from patients with Alzheimer’s disease. We found that structural modifications of the WSG site do not affect considerably the binding affinity. However, changes of the nitrogen donor group alter significantly the binding affinity of these probes. Also, increasing the hydrophilicity of the donor group leads to improved contrast between the Aβ deposits and the surrounding tissue in histological staining experiments.Keywords: Alzheimer’s disease; amyloid peptide; fluorescence; imaging agents; Molecular rotor
Co-reporter:Derek Fischer, Thong X. Nguyen, Lynnie Trzoss, Marianna Dakanali, Emmanuel A. Theodorakis
Tetrahedron Letters 2011 Volume 52(Issue 38) pp:4920-4923
Publication Date(Web):21 September 2011
DOI:10.1016/j.tetlet.2011.07.054
Stabilized 2-amino-1,3-dienes can participate in intramolecular Diels–Alder (IMDA) reactions with pendant dienophiles. We found that these dienes can be readily prepared via standard palladium-mediated coupling reactions and have comparable reactivity to 2-oxodienes. Application of these substrates to the synthesis of tetracyclic model systems representing the ABCE motif of the zoanthamines is presented.
Co-reporter:Taotao Ling, Jing Xu, Ryan Smith, Abbas Ali, Charles L. Cantrell, Emmanuel A. Theodorakis
Tetrahedron 2011 67(17) pp: 3023-3029
Publication Date(Web):
DOI:10.1016/j.tet.2011.02.078
Co-reporter:Dr. Jing Xu;Lynnie Trzoss;Weng K. Chang ;Dr. Emmanuel A. Theodorakis
Angewandte Chemie International Edition 2011 Volume 50( Issue 16) pp:3672-3676
Publication Date(Web):
DOI:10.1002/anie.201100313
Co-reporter:Dr. Jing Xu;Lynnie Trzoss;Weng K. Chang ;Dr. Emmanuel A. Theodorakis
Angewandte Chemie 2011 Volume 123( Issue 16) pp:3756-3760
Publication Date(Web):
DOI:10.1002/ange.201100313
Co-reporter:Jing Xu, Eduardo J. E. Caro-Diaz and Emmanuel A. Theodorakis
Organic Letters 2010 Volume 12(Issue 16) pp:3708-3711
Publication Date(Web):July 29, 2010
DOI:10.1021/ol1015652
An enantioselective formal synthesis of (−)-englerin A (1) is reported. Key to the strategy is a Rh-catalyzed [4 + 3] cycloaddition reaction between furan 10 and diazo ester 11 that, following an intramolecular aldol condensation, produces the tricyclic scaffold of englerin. This strategy also provides a rapid, efficient, and stereoselective access to the biologically significant core motif of the guaiane sesquiterpenes.
Co-reporter:Gianni Guizzunti, Thomas P. Brady, Derek Fischer, Vivek Malhotra, Emmanuel A. Theodorakis
Bioorganic & Medicinal Chemistry 2010 Volume 18(Issue 6) pp:2115-2122
Publication Date(Web):15 March 2010
DOI:10.1016/j.bmc.2010.02.007
The cellular activity of norrisolide (7), a novel Golgi-vesiculating agent, was dissected as function of its chemical structure. This natural product induces irreversible vesiculation of the Golgi membranes and blocks protein transport at the level of the Golgi. The Golgi localization and fragmentation effects of 7 depend on the presence of the perhydroindane core, while the irreversibility of fragmentation depends on the acetyl group of 7. We show that fluorescent derivatives of norrisolide are able to localize to the Golgi apparatus and represent important tools for the study of the Golgi structure and function.Our studies on the chemical biology of norrisolide are presented. This natural product was found to induce irreversible vesiculation of Golgi membranes and specifically block protein transport at the level of the Golgi apparatus. Through the use of fluorescent derivatives of norrisolide, we demonstrated that this compound binds directly to Golgi membranes, and that its perhydroindane core is necessary and sufficient for this binding.
Co-reporter:Jeyanthy Sutharsan;Marianna Dakanali Dr.;ChristinaC. Capule;MarkA. Haidekker Dr.;Jerry Yang Dr.;EmmanuelA. Theodorakis Dr.
ChemMedChem 2010 Volume 5( Issue 1) pp:56-60
Publication Date(Web):
DOI:10.1002/cmdc.200900440
Co-reporter:Oraphin Chantarasriwong;Ayse Batova Dr.;Warinthorn Chavasiri Dr.;EmmanuelA. Theodorakis Dr.
Chemistry - A European Journal 2010 Volume 16( Issue 33) pp:9944-9962
Publication Date(Web):
DOI:10.1002/chem.201000741

Abstract

Natural products have been a great source of many small molecule drugs for various diseases. In spite of recent advances in biochemical engineering and fermentation technologies that allow us to explore microorganisms and the marine environment as alternative sources of drugs, more than 70 % of the current small molecule therapeutics derive their structures from plants used in traditional medicine. Natural-product-based drug discovery relies heavily on advances made in the sciences of biology and chemistry. Whereas biology aims to investigate the mode of action of a natural product, chemistry aims to overcome challenges related to its supply, bioactivity, and target selectivity. This review summarizes the explorations of the caged Garcinia xanthones, a family of plant metabolites that possess a unique chemical structure, potent bioactivities, and a promising pharmacology for drug design and development.

Co-reporter:Oraphin Chantarasriwong;Ayse Batova Dr.;Warinthorn Chavasiri Dr.;EmmanuelA. Theodorakis Dr.
Chemistry - A European Journal 2010 Volume 16( Issue 33) pp:
Publication Date(Web):
DOI:10.1002/chem.201090163
Co-reporter:Jeyanthy Sutharsan, Darcy Lichlyter, Nathan E. Wright, Marianna Dakanali, Mark A. Haidekker, Emmanuel A. Theodorakis
Tetrahedron 2010 66(14) pp: 2582-2588
Publication Date(Web):
DOI:10.1016/j.tet.2010.01.093
Co-reporter:Alba Díaz-Rodríguez, Yogesh S. Sanghvi, Susana Fernández, Raymond F. Schinazi, Emmanuel A. Theodorakis, Miguel Ferrero and Vicente Gotor  
Organic & Biomolecular Chemistry 2009 vol. 7(Issue 7) pp:1415-1423
Publication Date(Web):11 Feb 2009
DOI:10.1039/B818707J
A chiral synthesis of a series of hexahydroisobenzofuran (HIBF) nucleosides has been accomplished viaglycosylation of a stereo-defined (syn-isomer) sugar motif 16 with the appropriate silylated bases. All nucleoside analogs were obtained in 52–71% yield as a mixture of α- and β-anomeric products increasing the breadth of the novel nucleosides available for screening. The structure of the novel bicyclic HIBF nucleosides was established by a single crystal X-ray structure of the β-HIBF thymine analog 22b. Furthermore, the sugar conformation for these nucleosides was established as N-type. Among the novel HIBF nucleosides synthesized, twenty-five compounds were tested as inhibitor of HIV-1 in human peripheral blood mononuclear (PBM) cells and seven were found to be active (EC50 = 12.3–36.2 μM). Six of these compounds were purine analogs with β-HIBF inosine analog 22o being the most potent (EC50 = 12.3 μM) among all compounds tested. The striking resemblance between didanosine (ddI) and 22o may explain the potent anti-HIV activity.
Co-reporter:Oraphin Chantarasriwong, Woo Cheal Cho, Ayse Batova, Warinthorn Chavasiri, Curtis Moore, Arnold L. Rheingold and Emmanuel A. Theodorakis  
Organic & Biomolecular Chemistry 2009 vol. 7(Issue 23) pp:4886-4894
Publication Date(Web):24 Sep 2009
DOI:10.1039/B913496D
The combination of unique structure and potent bioactivity exhibited by several family members of the caged Garciniaxanthones, led us to evaluate their pharmacophore. We have developed a Pd(0)-catalyzed method for the reverse prenylation of catechols that, together with a Claisen/Diels–Alder reaction cascade, provides rapid and efficient access to various caged analogues. Evaluation of the growth inhibitory activity of these compounds leads to the conclusion that the intact ABC ring system containing the C-ring caged structure is essential to the bioactivity. Studies with cluvenone (7) also showed that these compounds induce apoptosis and exhibit significant cytotoxicity in multidrug-resistant leukemia cells. As such, the caged Garciniaxanthone motif represents a new and potent pharmacophore.
Co-reporter:Derek Fischer;Emmanuel A Theodorakis;Mark A Haidekker
Nature Protocols 2007 2(1) pp:
Publication Date(Web):2007-02-08
DOI:10.1038/nprot.2006.455
In biological systems, viscosity plays an important role from the microscopic (cellular) to the systemic level. Examples are the viscosity of the cell membrane1, 2, 3, 4 and viscosity changes of blood plasma5, 6, 7. At all levels, in biological systems as well as in microfluidic devices, viscosity-related investigations strongly depend on the availability of methods that allow detection of viscosity changes on a microscopic scale and with very short response times8, 9, 10.The ratiometric dye system 1 is used by dissolving a small amount of 1 in the fluid to be examined. Under 360 nm excitation, an emission scan from 400 to 550 nm is performed, and the emission intensity at 482 nm (rotor peak) is divided by the emission at 402 nm reference peak. The resulting ratiometric intensity needs to be calibrated by the intensities of a similar fluid with known viscosity (equivalent to the calibration of mechanical instruments).Synthesis of ester 4 Steps 1–7: 5 min; Steps 8 and 9: 2 min; Step 10: 3 min; Steps 11–13: 6 h, Steps 14–16: 20 min; Steps 17 and 18: 30 min; Step 19: 40 min for rotary evaporation and an additional hour for high-vacuum dryingSynthesis of ester 3 Steps 20–22: 10 min; Steps 23 and 24: 2 min; Step 25: 11 h; Steps 26 and 27: 20 min.; Steps 28 and 29: 10 min; Step 30: 40 min for rotary evaporation and an additional hour for high-vacuum drying; Step 31: 10 min to dissolve and at least 8 h to crystallize; Step 32: 1.5 hSynthesis of ester 2 Step 33: 5 min; Steps 34 and 35: 35 min; Step 36: 3 min; Steps 37–39: 1.5 h; Step 40: minimum of 6 h; Step 41: 10 min; Steps 42–45: 20 min; Step 46: 6 min; Steps 47–49: up to 12 h; Steps 50–52: 35 min; Steps 54 and 55: 15 min; Steps 55–57: 25 min; Step 58: total of 2 hSynthesis of probe 1 Step 59: 5 min; Steps 60 and 61: 35 min; Step 62: 3 min; Steps 63–65: 1.5 h; Step 66: minimum of 6 h; Steps 67 and 68: 7 min; Steps 69 and 70: 5 min; Step 71: 4 h; Step 72: 3 min; Step 73: 15 min; Step 74: 5 min; Step 75: 30 min; Step 76: 4 h; Step 77: 5 min to dissolve and up to 12 h to crystallize; Step 78: 2 hFluid viscosity measurement Step 79: 1 min; Step 80: 2 min; Step 81: 10 min (can be started before Steps 79 and 80); Steps 82 and 83, 2.5–3 h; Step 84, 2 min; Step 85, 10 min depending on the instrument scanning speed; Step 86, typically 10 minTroubleshooting advice can be found in Table 1. 1H NMR (400 MHz, CDCl3): δ 4.65 (bs, 1H), 4.27 (t, J = 6.4 Hz, 2H), 3.48 (s, 2H), 3.22 (m, 2H), 1.88 (m, 2H) 1.43 (s, 9H); 13C NMR (100 MHz, CDCl3): δ 163.0, 155.9, 113.0, 79.4, 64.2, 36.9, 28.8, 28.3, 24.7; HR-EI-MS calculated for C11H18N2O4 [M]+ 242.1261, found: 242.1256. Ester 3 1H NMR (400 MHz, CDCl3): δ 8.06 (s, 1H), 7.94 (d, J = 9.2 Hz, 2H), 6.69 (d, J = 9.2 Hz, 2H), 4.82 (bs, 1H), 4.34 (t, J = 6.0 Hz, 2H), 3.26 (m, 2H), 3.11 (s, 6H), 1.93 (m, 2H), 1.44 (s, 9H); 13C NMR (75 MHz, CDCl3): δ 164.4, 156.0, 154.8, 153.6, 134.5, 119.3, 117.5, 111.5, 93.4, 79.2, 63.4, 40.0, 37.3, 29.0, 28.4; HR-EI-MS calculated for C20H27N3O4 [M]+ 373.1996, found: 373.1990. Ester 2 1H NMR (400 MHz, CDCl3): δ 8.07 (s, 1H), 7.92 (d, J = 9.2 Hz, 2H), 6.69 (d, J = 9.2 Hz, 2H), 6.18 (bs, 1H), 4.34 (t, J = 5.8 Hz, 2H), 4.11 (bs, 2H), 3.41 (q, J = 6 Hz, 2H), 3.11 (s, 6H), 2.73 (bs, 2H), 2.34 (dt, J = 11.4, 3.6 Hz, 1H), 1.94 (p, 6 Hz, 2H), 1.78 (m, 2H), 1.63 (dt, J = 12.0, 4.0 Hz, 2H), 1.44 (s, 9H); 13C NMR (100 MHz, CDCl3): δ 174.7, 164.2, 154.8, 154.5, 153.6, 136.4, 134.1, 118.9, 117.8, 111.4, 110.8, 92.4, 79.2, 64.2, 42.8, 39.9, 36.6, 28.4, 28.2; HR-FAB-MS calculated for C26H36N4O5 [M]+ 484.2680, found: 484.2678. Probe 1 1H NMR (400 MHz, CDCl3): δ 8.07 (s, 1H), 7.93 (d, J = 8.8 Hz, 2H), 7.86 (s, 1H), 7.43 (d, J = 8.4 Hz, 1H), 6.87 (dd, J = 8.8, 2.4 Hz, 1H), 6.81 (d, J = 2 Hz, 1H), 6.71 (d, J = 9.2 Hz, 2H), 6.29 (m, 1H), 4.67 (m, J = 13.2 Hz, 1H), 4.36 (t, J = 5.2 Hz, 2H), 3.88 (s, 3H), 3.65 (m, J = 13.6 Hz, 1H), 3.44 (q, J = 5.8 Hz, 2H), 3.22 (m, J = 12.0 Hz, 1H), 3.13 (s, 6H), 2.93 (m, J = 12.0 Hz, 1H), 2.53 (dt, J = 12.0, 4.0 Hz, 1H), 1.95 (m, 3H), 1.85-1.74 (m, 3H); 13C NMR (100 MHz, CDCl3): δ 174.3, 164.4, 163.8, 163.6, 158.3, 156.0, 155.2, 153.9, 143.1, 134.3, 129.6, 121.6, 119.1, 118.2, 113.2, 112.0, 111.6, 100.6, 92.3, 65.0, 55.9, 46.7, 42.6, 41.5, 40.0, 37.3, 29.0, 28.5, 28.4; HR-FAB-MS calculated for C32H34N4O7 [M]+ 586.2422, found: 586.2428.
Co-reporter:Ayse Batova, Thanh Lam, Veit Wascholowski, Alice L. Yu, Athanassios Giannis and Emmanuel A. Theodorakis  
Organic & Biomolecular Chemistry 2007 vol. 5(Issue 3) pp:494-500
Publication Date(Web):20 Dec 2006
DOI:10.1039/B612903J
Inspired by the combination of unique structure and potent bioactivities exhibited by several family members of the caged Garcinia xanthones, we developed a synthesis of simplified analogues that maintain the overall caged motif. The caged structure of these compounds was constructed via a site-selective Claisen/Diels–Alder reaction cascade. We found that the fully substituted caged structure, in which are included the C18 and C23 geminal methyl groups, is necessary to maintain bioactivity. Analogue 17 had comparable activity to the natural products of this family, such as gambogic acid. These compounds exhibit cytotoxicity in a variety of tumor cell lines at low micromolar concentrations and were found to induce apoptosis in HUVE cells. In addition, studies with HL-60 and HL-60/ADR cells indicate that these compounds are not affected by the mechanisms of multidrug resistance, conferred by P glycoproteinexpression, typical of relapsed cancers and thus represent a new and potent pharmacophore.
Co-reporter:Derek Fischer
European Journal of Organic Chemistry 2007 Volume 2007(Issue 25) pp:4193-4196
Publication Date(Web):31 MAY 2007
DOI:10.1002/ejoc.200700336

Acid mediated cyclopropylcarbinol ring expansion has been shown to be a viable method for the construction of the AB ring framework of lancifodilactone F and related terpenoids of the Schisandraceae family of natural products. We found that this rearrangement proceeds with good stereochemical control based on inversion of the C10 cyclopropyl center. Our studies indicate that the cis-decalin motif of 31 could be used as a key synthetic precursor of certain Schisandraceae metabolites.(© Wiley-VCH Verlag GmbH & Co. KGaA, 69451 Weinheim, Germany, 2007)

Co-reporter:Suetying Chow, Ke Wen, Yogesh S. Sanghvi, Emmanuel A. Theodorakis
Bioorganic & Medicinal Chemistry Letters 2003 Volume 13(Issue 10) pp:1631-1634
Publication Date(Web):19 May 2003
DOI:10.1016/S0960-894X(03)00291-9
An efficient and chemoselective synthesis of 2′-O-methylguanosine (6) has been accomplished in high yield without protection of the guanine base. The salient feature of the synthesis of 6 lies in the application of methylene-bis-(diisopropylsilyl chloride), (MDPSCl2, 2) as a new 3′,5′-O-protecting group for nucleosides. Use of CH3Cl as a weak electrophile and NaHMDS as a mild base was crucial to the success of the 2′-O-methylation of 3′,5′-O-protected guanosine.An efficient and chemoselective synthesis of of 2′-O-methylguanosine (6) has been accomplished in three steps and 61% overall yield from guanosine (3) without the need for protection of the nucleobase.
Co-reporter:Colin Jamora, Maria A Theodoraki, Vivek Malhotra, Emmanuel A Theodorakis
Bioorganic & Medicinal Chemistry 2001 Volume 9(Issue 6) pp:1365-1370
Publication Date(Web):June 2001
DOI:10.1016/S0968-0896(01)00051-7
Clerocidin, a diterpenoid natural product, has been shown in vitro to inhibit DNA religation following cleavage by topoisomerase II. Herein, we characterize the efficacy and specificity of clerocidin in HeLa cells. Our results suggest that clerocidin recognizes topoisomerase II as its main intracellular target and binds to this enzyme prior to formation of the ‘cleavable complex’ with DNA. These pharmacological features attest to the promising chemotherapeutic potential of this natural product.The effect of clerocidin on the growth of HeLa cells was examined. Our results suggest that this compound binds to topoisomerase II prior to formation of cleavable complex with DNA and exhibits its lethal action by inducing cell cycle arrest at the G2/M phase, ultimately leading to apoptosis. Furthermore, clerocidin was found not to affect transcription, translation and the secretory ability of cells until the onset of apoptosis, attesting to the specific antimitotic profile of this drug.
Co-reporter:Keith E. Drouet Dr.
Chemistry - A European Journal 2000 Volume 6(Issue 11) pp:
Publication Date(Web):14 JUN 2000
DOI:10.1002/1521-3765(20000602)6:11<1987::AID-CHEM1987>3.0.CO;2-U

Our studies toward the total synthesis of the reveromycin family of natural products are described herein. Our synthetic approach is efficient, stereocontrolled, and convergent and has resulted in the first synthesis of reveromycin B (4) and C19-epi-reveromycin B (55). Key steps of this successful strategy include: a modified Negishi coupling (construction of C7-C8 bond) and a Kishi-Nozaki reaction (construction of C19-C20 bond), which were employed in the attachment of the target side chains. The key building blocks for the total synthesis were thus defined as vinyl iodide 6, alkyne 7, and alkyne 8. Our synthesis illustrates the utility of the modified Negishi coupling for the construction of complex dienes, confirms the proposed stereochemistry of reveromycins and paves the way for the preparation of designed analogues for biological study.

Co-reporter:Taotao Ling;Alan X. Xiang
Angewandte Chemie 1999 Volume 111(Issue 20) pp:
Publication Date(Web):13 OCT 1999
DOI:10.1002/(SICI)1521-3757(19991018)111:20<3277::AID-ANGE3277>3.0.CO;2-M

Die Bildung der C11-C1′-Bindung durch Verwendung der radikalischen Decarboxylierung und Chinonaddition nach Barton ist der Grundstein für eine neue konvergente Totalsynthese der marinen Metaboliten Avarol 1 und Avaron 2 (siehe Schema), die antimitotische, antileukämische und antivirale Wirkung aufweisen.

Co-reporter:Taotao Ling;Alan X. Xiang
Angewandte Chemie International Edition 1999 Volume 38(Issue 20) pp:
Publication Date(Web):13 OCT 1999
DOI:10.1002/(SICI)1521-3773(19991018)38:20<3089::AID-ANIE3089>3.0.CO;2-W

Formation of the C11−C1′ bond through application of Barton's radical decarboxylation and quinone addition is the cornerstone of a new convergent and concise synthesis of the marine metabolites avarol (1) and avarone (2; see scheme), for which antimitotic, antileukemic, and antiviral effects have been reported.

Co-reporter:Kevin Cao ; Mona Farahi ; Marianna Dakanali ; Willy M. Chang ; Christina J. Sigurdson ; Emmanuel A. Theodorakis ;Jerry Yang
Journal of the American Chemical Society () pp:
Publication Date(Web):August 6, 2012
DOI:10.1021/ja3063698
A major challenge for diagnosing and monitoring the progression of amyloid-based diseases is the capability to distinguish between amyloid deposits that are associated with related, but distinctly different, diseases. Here, we demonstrate that aminonaphthalenyl 2-cyanoacrylate-based probes can fluorescently discriminate between different types of amyloid deposits in brain. The discriminating capability of these molecular rotors is due to the stabilization of the ground versus excited states of these probes as a function of the polarity of their microenvironment (i.e., within the binding pocket on the amyloid). This property makes it possible, for the first time, to estimate the inherent static relative permittivity (ε0) of the binding pocket of each amyloid within tissue. The capability to selectively follow the deposition of specific amyloids in tissue may provide important information for therapeutic development that is not readily accessible from currently available technology.
Co-reporter:Eduardo J. E. Caro-Diaz, Aereas Aung, Jing Xu, Shyni Varghese and Emmanuel A. Theodorakis
Inorganic Chemistry Frontiers 2014 - vol. 1(Issue 2) pp:NaN139-139
Publication Date(Web):2014/02/07
DOI:10.1039/C3QO00067B
Herein, we report the effects of fusarisetin A on cell morphology focusing in particular on actin and microtubules dynamics. We also report the synthesis and structure–function studies of a designed library of synthetic fusarisetins in cell-based assays.
Co-reporter:Laura S. Kocsis, Kristyna M. Elbel, Billie A. Hardigree, Kay M. Brummond, Mark A. Haidekker and Emmanuel A. Theodorakis
Organic & Biomolecular Chemistry 2015 - vol. 13(Issue 10) pp:NaN2973-2973
Publication Date(Web):2015/01/13
DOI:10.1039/C4OB02563F
We describe the design, synthesis and fluorescent profile of a family of environment-sensitive dyes in which a dimethylamino (donor) group is conjugated to a cyanoacrylate (acceptor) unit via a cyclopenta[b]naphthalene ring system. This assembly satisfies the typical D–π-A motif of a fluorescent molecular rotor and exhibits solvatochromic and viscosity-sensitive fluorescence emission. The central naphthalene ring system of these dyes was synthesized via a novel intramolecular dehydrogenative dehydro-Diels–Alder (IDDDA) reaction that permits incorporation of the donor and acceptor groups in variable positions around the aromatic core. A bathochromic shift of excitation and emission peaks was observed with increasing solvent polarity but the dyes exhibited a complex emission pattern with a second red emission band when dissolved in nonpolar solvents. Consistent with other known molecular rotors, the emission intensity increased with increasing viscosity. Interestingly, closer spatial proximity between the donor and the acceptor groups led to decreased viscosity sensitivity combined with an increased quantum yield. This observation indicates that structural hindrance of intramolecular rotation dominates when the donor and acceptor groups are in close proximity. The examined compounds give insight into how excited state intramolecular rotation can be influenced by both the solvent and the chemical structure.
Co-reporter:Alba Díaz-Rodríguez, Yogesh S. Sanghvi, Susana Fernández, Raymond F. Schinazi, Emmanuel A. Theodorakis, Miguel Ferrero and Vicente Gotor
Organic & Biomolecular Chemistry 2009 - vol. 7(Issue 7) pp:NaN1423-1423
Publication Date(Web):2009/02/11
DOI:10.1039/B818707J
A chiral synthesis of a series of hexahydroisobenzofuran (HIBF) nucleosides has been accomplished viaglycosylation of a stereo-defined (syn-isomer) sugar motif 16 with the appropriate silylated bases. All nucleoside analogs were obtained in 52–71% yield as a mixture of α- and β-anomeric products increasing the breadth of the novel nucleosides available for screening. The structure of the novel bicyclic HIBF nucleosides was established by a single crystal X-ray structure of the β-HIBF thymine analog 22b. Furthermore, the sugar conformation for these nucleosides was established as N-type. Among the novel HIBF nucleosides synthesized, twenty-five compounds were tested as inhibitor of HIV-1 in human peripheral blood mononuclear (PBM) cells and seven were found to be active (EC50 = 12.3–36.2 μM). Six of these compounds were purine analogs with β-HIBF inosine analog 22o being the most potent (EC50 = 12.3 μM) among all compounds tested. The striking resemblance between didanosine (ddI) and 22o may explain the potent anti-HIV activity.
Co-reporter:Ayse Batova, Thanh Lam, Veit Wascholowski, Alice L. Yu, Athanassios Giannis and Emmanuel A. Theodorakis
Organic & Biomolecular Chemistry 2007 - vol. 5(Issue 3) pp:NaN500-500
Publication Date(Web):2006/12/20
DOI:10.1039/B612903J
Inspired by the combination of unique structure and potent bioactivities exhibited by several family members of the caged Garcinia xanthones, we developed a synthesis of simplified analogues that maintain the overall caged motif. The caged structure of these compounds was constructed via a site-selective Claisen/Diels–Alder reaction cascade. We found that the fully substituted caged structure, in which are included the C18 and C23 geminal methyl groups, is necessary to maintain bioactivity. Analogue 17 had comparable activity to the natural products of this family, such as gambogic acid. These compounds exhibit cytotoxicity in a variety of tumor cell lines at low micromolar concentrations and were found to induce apoptosis in HUVE cells. In addition, studies with HL-60 and HL-60/ADR cells indicate that these compounds are not affected by the mechanisms of multidrug resistance, conferred by P glycoproteinexpression, typical of relapsed cancers and thus represent a new and potent pharmacophore.
Co-reporter:Oraphin Chantarasriwong, Woo Cheal Cho, Ayse Batova, Warinthorn Chavasiri, Curtis Moore, Arnold L. Rheingold and Emmanuel A. Theodorakis
Organic & Biomolecular Chemistry 2009 - vol. 7(Issue 23) pp:NaN4894-4894
Publication Date(Web):2009/09/24
DOI:10.1039/B913496D
The combination of unique structure and potent bioactivity exhibited by several family members of the caged Garciniaxanthones, led us to evaluate their pharmacophore. We have developed a Pd(0)-catalyzed method for the reverse prenylation of catechols that, together with a Claisen/Diels–Alder reaction cascade, provides rapid and efficient access to various caged analogues. Evaluation of the growth inhibitory activity of these compounds leads to the conclusion that the intact ABC ring system containing the C-ring caged structure is essential to the bioactivity. Studies with cluvenone (7) also showed that these compounds induce apoptosis and exhibit significant cytotoxicity in multidrug-resistant leukemia cells. As such, the caged Garciniaxanthone motif represents a new and potent pharmacophore.
Co-reporter:Hyung-Jo Yoon, Marianna Dakanali, Darcy Lichlyter, Willy M. Chang, Karen A. Nguyen, Matthew E. Nipper, Mark A. Haidekker and Emmanuel A. Theodorakis
Organic & Biomolecular Chemistry 2011 - vol. 9(Issue 9) pp:NaN3540-3540
Publication Date(Web):2011/03/24
DOI:10.1039/C0OB01042A
We describe the design, synthesis and fluorescent profile of a family of self-calibrating dyes that provide ratiometric measurements of fluid viscosity. The design is based on covalently linking a primary fluorophore (reference) that displays a viscosity-independent fluorescence emission with a secondary fluorophore (sensor) that exhibits a viscosity-sensitive fluorescence emission. Characterization of fluorescent properties was made with separate excitation of the units and through Resonance Energy Transfer from the reference to the sensor dye. The chemical structures of both fluorophores and the linker length have been evaluated in order to optimize the overall brightness and sensitivity of the viscosity measurements. We also present an application of such ratiometric dyes for the detection of membrane viscosity changes in a liposome model.
Co-reporter:Kristyna M. Elbel, Gianni Guizzunti, Maria A. Theodoraki, Jing Xu, Ayse Batova, Marianna Dakanali and Emmanuel A. Theodorakis
Organic & Biomolecular Chemistry 2013 - vol. 11(Issue 20) pp:NaN3348-3348
Publication Date(Web):2013/03/25
DOI:10.1039/C3OB40395E
Natural products of the caged Garcinia xanthones (CGX) family are characterized by a unique chemical structure, potent bioactivities and promising pharmacological profiles. We have developed a Claisen/Diels–Alder reaction cascade that, in combination with a Pd(0)-catalyzed reverse prenylation, provides rapid and efficient access to the CGX pharmacophore, represented by the structure of cluvenone. To further explore this pharmacophore, we have synthesized various A-ring oxygenated analogues of cluvenone and have evaluated their bioactivities in terms of growth inhibition, mitochondrial fragmentation, induction of mitochondrial-dependent cell death and Hsp90 client inhibition. We found that installation of an oxygen functionality at various positions of the A-ring influences significantly both the site-selectivity of the Claisen/Diels–Alder reaction and the bioactivity of these compounds, due to remote electronic effects.
Co-reporter:Mark A. Haidekker and Emmanuel A. Theodorakis
Journal of Materials Chemistry A 2016 - vol. 4(Issue 14) pp:NaN2718-2718
Publication Date(Web):2016/01/14
DOI:10.1039/C5TC03504J
Fluorescent molecules, with their almost instantaneous response to external influences and relatively low-cost measurement instrumentation, have been attractive analytical tools and biosensors for centuries. More recently, advanced chemical synthesis and targeted design have accelerated the development of fluorescent probes. This article focuses on dyes with segmental mobility (known as fluorescent molecular rotors) that act as mechanosensors, which are known for their relationship of emission quantum yield with microviscosity. Fluorescence lifetime is directly related to quantum yield, but steady-state emission intensity is not. To remove confounding factors with steady-state instrumentation, dual-band emission dyes can be used, and molecular rotors have been developed that either have intrinsic dual emission or that have a non-sensitive reference unit to provide a calibration emission band. We report on theory, chemical structure, applications and targeted design of several classes of dual-emission molecular rotors.
Co-reporter:Jing Xu, Eduardo J. E. Caro-Diaz, Michelle H. Lacoske, Chao-I. Hung, Colin Jamora and Emmanuel A. Theodorakis
Chemical Science (2010-Present) 2012 - vol. 3(Issue 12) pp:NaN3386-3386
Publication Date(Web):2012/08/23
DOI:10.1039/C2SC21308G
Fusarisetin A (1) is a recently isolated natural product that displays an unprecedented chemical motif and remarkable bioactivities as a potent cancer migration inhibitor. We describe here our studies leading to an efficient and scalable total synthesis of 1. Essential to the strategy was the development of a new route for the formation of a trans-decalin moiety of this compound and the application of an oxidative radical cyclization (ORC) reaction that produces fusarisetin A (1) from equisetin (2) via a bio-inspired process. TEMPO-induced and metal/O2-promoted ORC reactions were evaluated. Biological screening in vitro confirms the reported potency of (+)-1. Importantly, ex vivo studies show that this compound is able to inhibit different types of cell migration. Moreover, the C5 epimer of (+)-1 was also identified as a potent cancer migration inhibitor, while (−)-1 and 2 were found to be significantly less potent. The optimized synthesis is applicable on gram scale and provides a solid platform for analogue synthesis and methodical biological study.
Co-reporter:Michelle H. Lacoske, Jing Xu, Noel Mansour, Chao Gao and Emmanuel A. Theodorakis
Inorganic Chemistry Frontiers 2015 - vol. 2(Issue 4) pp:NaN393-393
Publication Date(Web):2015/02/16
DOI:10.1039/C4QO00332B
Herein we describe a scalable approach to the decalin moiety of maklamicin. Key to the synthesis is an intramolecular Diels–Alder (IMDA) reaction that proceeds via an endo-axial transition state to generate the desired stereochemistry. We explored the diastereoselectivity of the IMDA reaction as a function of both chiral catalysis and acyclic precursor stereochemistry.
maklamicin
Ferrocene,1-[(S)-(dimethylamino)[2-(diphenylphosphino)phenyl]methyl]-2-(diphenylphosphino)-,(2R)- (9CI)
Propanoic acid, 3-[[(1,1-dimethylethyl)diphenylsilyl]oxy]-2-methyl-,methyl ester, (2R)-
Propanal, 3-[[(1,1-dimethylethyl)diphenylsilyl]oxy]-2-methyl-, (2R)-